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1|Sequence|1|10|MKKLMVVLSL

 ***** No hits found ******


2|Sequence|6|15|VVLSLIAAAW

>sp|POLS_EEEVF|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 1    VVLSLIAAA 9
            +VL LIA A
Sbjct: 1223 IVLGLIATA 1231


>sp|POLS_EEEV8|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 1    VVLSLIAAA 9
            +VL LIA A
Sbjct: 1223 IVLGLIATA 1231


>sp|POLS_EEEV3|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 1    VVLSLIAAA 9
            +VL LIA A
Sbjct: 1221 IVLGLIATA 1229


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 1    VVLSLIAAA 9
            +VL LIA A
Sbjct: 1223 IVLGLIATA 1231


>sp|POLS_EEEV|STRUCTURAL polyprotein|Eastern equine encephalitis virus (EEEV)

Query: 1    VVLSLIAAA 9
            +VL LIA A
Sbjct: 1220 IVLGLIATA 1228


>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)

Query: 1   VVLSLIAAAW 10
           V+  LIA AW
Sbjct: 804 VMAGLIAKAW 813


>sp|POLG_LANVY|GENOME polyprotein|Langat virus (strain Yelantsev)

Query: 3   LSLIAAAW 10
           LSL+  AW
Sbjct: 249 LSLVMVAW 256




3|Sequence|11|20|IAAAWAEEQN

>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)

Query: 3    AAWAEEQN 10
            AAW++EQN
Sbjct: 2922 AAWSDEQN 2929


>sp|POLG_POWVL|GENOME polyprotein|Tick-borne powassan virus (strain LB)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2923 GAWSDEQN 2930


>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2924 GAWSDEQN 2931


>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2924 GAWSDEQN 2931


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2920 GAWSDEQN 2927


>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2922 GAWSDEQN 2929


>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2922 GAWSDEQN 2929


>sp|POLG_LIV|GENOME polyprotein|Louping ill virus (LIV)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2922 GAWSDEQN 2929


>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2922 GAWSDEQN 2929


>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)

Query: 3    AAWAEEQN 10
             AW++EQN
Sbjct: 2922 GAWSDEQN 2929


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 2   AAAWAEEQ 9
           A  WA+EQ
Sbjct: 197 ATNWADEQ 204


>sp|POLN_MAYAB|POLYPROTEIN P1234|Mayaro virus (strain Brazil) (MAYV)

Query: 2   AAAWAEEQ 9
           A  WA+EQ
Sbjct: 196 ATNWADEQ 203


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 2    AAAWAEEQ 9
            + AW EEQ
Sbjct: 1235 SPAWPEEQ 1242


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 2    AAAWAEEQ 9
            + AW EEQ
Sbjct: 1235 SPAWPEEQ 1242


>sp|PRIM_EBVB9|DNA primase|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   AAAWAEE 8
           ++AWAE+
Sbjct: 218 SSAWAEQ 224


>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 3   AAWAEEQN 10
           + WA+E+N
Sbjct: 240 SQWAQEEN 247


>sp|DR5_HHV6U|UNCHARACTERIZED protein DR5|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  AAWAEE 8
          A+WAE+
Sbjct: 89 ASWAEQ 94


>sp|NCAP_VSIVS|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 4   AWAEEQN 10
            W E+QN
Sbjct: 380 GWFEDQN 386


>sp|NCAP_VSIVN|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 4   AWAEEQN 10
            W E+QN
Sbjct: 380 GWFEDQN 386


>sp|NCAP_VSIVG|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 4   AWAEEQN 10
            W E+QN
Sbjct: 380 GWFEDQN 386


>sp|NCAP_VSIVC|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 4   AWAEEQN 10
            W E+QN
Sbjct: 380 GWFEDQN 386


>sp|NCAP_VSIVA|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 4   AWAEEQN 10
            W E+QN
Sbjct: 380 GWFEDQN 386


>sp|PP65_HCMVA|65 kDa phosphoprotein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   AWAEEQN 10
           AW  +QN
Sbjct: 167 AWTRQQN 173


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 199 WADEQ 203


>sp|POLN_CHIK3|POLYPROTEIN P1234|Chikungunya virus (strain 37997) (CHIKV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 199 WADEQ 203


>sp|PP65_HCMVM|65 kDa phosphoprotein|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   AWAEEQN 10
           AW  +QN
Sbjct: 167 AWTRQQN 173


>sp|PP65_HCMVT|65 kDa phosphoprotein|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 4   AWAEEQN 10
           AW  +QN
Sbjct: 157 AWTRQQN 163


>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 198 WADEQ 202


>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 198 WADEQ 202


>sp|POLN_RRVN|POLYPROTEIN P1234|Ross river virus (strain NB5092)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 197 WADEQ 201


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 197 WADEQ 201


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 199 WADEQ 203


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 199 WADEQ 203


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 5   WAEEQ 9
           WA+EQ
Sbjct: 199 WADEQ 203


>sp|TRM1_HHV1F|TRIPARTITE terminase subunit 1|Human herpesvirus 1 (strain F)

Query: 1   IAAAW 5
           IAAAW
Sbjct: 213 IAAAW 217


>sp|DNBI_HHV2H|MAJOR DNA-binding protein|Human herpesvirus 2 (strain HG52)

Query: 2   AAAWAEE 8
           AAAWA +
Sbjct: 930 AAAWAPQ 936


>sp|DNBI_HHV2|MAJOR DNA-binding protein|Human herpesvirus 2 (HHV-2) (Human

Query: 2   AAAWAEE 8
           AAAWA +
Sbjct: 930 AAAWAPQ 936




4|Sequence|16|25|AEEQNKLVHG

>sp|NCAP_PIARV|NUCLEOPROTEIN mammarenavirus (PICV) (Pichind mammarenavirus)

Query: 2   EEQNKLVHG 10
           +EQ+K  HG
Sbjct: 415 KEQSKYSHG 423


>sp|PRIM_VZVO|DNA primase|Varicella-zoster virus (strain Oka vaccine)

Query: 2  EEQNKLVH 9
          +E+N+++H
Sbjct: 75 DEENQIMH 82


>sp|PRIM_VZVD|DNA primase|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2  EEQNKLVH 9
          +E+N+++H
Sbjct: 75 DEENQIMH 82




5|Sequence|21|30|KLVHGGPCDK

>sp|PG143_MONPV|VIRION membrane protein OPG143|Monkeypox virus (MPXV)

Query: 2  LVHGGPC 8
          L+HG PC
Sbjct: 84 LIHGEPC 90


>sp|PG143_VAR67|VIRION membrane protein OPG143|Variola virus (isolate

Query: 2  LVHGGPC 8
          L+HG PC
Sbjct: 84 LIHGEPC 90


>sp|A16_VACCA|VIRION membrane protein A16|Vaccinia virus (strain Ankara) (VACV)

Query: 2  LVHGGPC 8
          L+HG PC
Sbjct: 84 LIHGEPC 90


>sp|PG143_VACCC|VIRION membrane protein OPG143|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2  LVHGGPC 8
          L+HG PC
Sbjct: 84 LIHGEPC 90


>sp|A16_VACCT|VIRION membrane protein A16|Vaccinia virus (strain Tian Tan)

Query: 2  LVHGGPC 8
          L+HG PC
Sbjct: 84 LIHGEPC 90


>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   KLVHGGP-CD 9
           K+VHG P CD
Sbjct: 679 KVVHGEPTCD 688


>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   KLVHGGP-CD 9
           K+VHG P CD
Sbjct: 679 KVVHGEPTCD 688


>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   KLVHGGP-CD 9
           K+VHG P CD
Sbjct: 679 KVVHGEPTCD 688


>sp|NCAP_MUMPZ|NUCLEOPROTEIN virus genotype N (strain

Query: 3   VHGGPCDK 10
           V G PCD+
Sbjct: 152 VEGQPCDE 159


>sp|NCAP_MUMPM|NUCLEOPROTEIN virus genotype B (strain

Query: 3   VHGGPCDK 10
           V G PCD+
Sbjct: 152 VEGQPCDE 159


>sp|NCAP_MUMPJ|NUCLEOPROTEIN virus genotype A (strain

Query: 3   VHGGPCDK 10
           V G PCD+
Sbjct: 152 VEGQPCDE 159


>sp|NCAP_MUMPE|NUCLEOPROTEIN virus (strain Enders) (MuV)

Query: 3   VHGGPCDK 10
           V G PCD+
Sbjct: 152 VEGQPCDE 159


>sp|UL13_HCMVM|UNCHARACTERIZED protein UL13|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 5   GGPCD 9
           GGPC+
Sbjct: 426 GGPCE 430


>sp|UL13_HCMVA|UNCHARACTERIZED protein UL13|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5   GGPCD 9
           GGPC+
Sbjct: 426 GGPCE 430


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 2   LVHGGPC 8
           ++ GGPC
Sbjct: 311 VLEGGPC 317


>sp|VE2_HPV27|REGULATORY protein E2|Human papillomavirus 27

Query: 5   GGPCDK 10
           GG CDK
Sbjct: 345 GGKCDK 350


>sp|VPAP_HCMVM|DNA polymerase processivity factor|Human cytomegalovirus (strain

Query: 2   LVHGGP 7
           LVH GP
Sbjct: 183 LVHAGP 188


>sp|VPAP_HCMVA|DNA polymerase processivity factor|Human cytomegalovirus (strain AD169)

Query: 2   LVHGGP 7
           LVH GP
Sbjct: 183 LVHAGP 188


>sp|GP_RVFVZ|ENVELOPMENT polyprotein|Rift valley fever virus (strain

Query: 4   HGGPCDK 10
           HG PC K
Sbjct: 235 HGNPCMK 241


>sp|GP_RVFV|ENVELOPMENT polyprotein|Rift valley fever virus (RVFV)

Query: 4   HGGPCDK 10
           HG PC K
Sbjct: 235 HGNPCMK 241


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1250 LVHGSP 1255


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1250 LVHGSP 1255


>sp|POLG_POL2W|GENOME polyprotein|Poliovirus type 2 (strain W-2)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1251 LVHGSP 1256


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1251 LVHGSP 1256


>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1253 LVHGSP 1258


>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1253 LVHGSP 1258


>sp|POLG_CXA21|GENOME polyprotein|Coxsackievirus A21 (strain Coe)

Query: 2    LVHGGP 7
            LVHG P
Sbjct: 1251 LVHGSP 1256


>sp|NP03_VZVO|NUCLEAR phosphoprotein UL3 homolog|Varicella-zoster virus (strain Oka

Query: 3  VHGGPC 8
          +H GPC
Sbjct: 20 LHRGPC 25


>sp|NP03_VZVD|NUCLEAR phosphoprotein UL3 homolog|Varicella-zoster virus (strain Dumas)

Query: 3  VHGGPC 8
          +H GPC
Sbjct: 20 LHRGPC 25


>sp|ENV_HV1MP|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 6   GPCDK 10
           GPC+K
Sbjct: 237 GPCEK 241


>sp|EBNA3_EBVB9|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   VHGGPC 8
           +HG PC
Sbjct: 862 IHGRPC 867


>sp|EBNA3_EBVG|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   VHGGPC 8
           +HG PC
Sbjct: 853 IHGRPC 858


>sp|EBNA3_EBVA8|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 3   VHGGPC 8
           +HG PC
Sbjct: 843 IHGRPC 848


>sp|DPOL_HBVA3|PROTEIN P|Hepatitis B virus genotype A2

Query: 6   GPCDK 10
           GPCD+
Sbjct: 352 GPCDE 356


>sp|DPOL_HBVA7|PROTEIN P|Hepatitis B virus genotype A2

Query: 6   GPCDK 10
           GPCD+
Sbjct: 352 GPCDE 356


>sp|VE1_HPV31|REPLICATION protein E1|Human papillomavirus 31

Query: 2   LVHGGP 7
           L+HG P
Sbjct: 454 LIHGAP 459


>sp|DPOL_HBVA4|PROTEIN P|Hepatitis B virus genotype A2

Query: 6   GPCDK 10
           GPCD+
Sbjct: 352 GPCDE 356


>sp|R1A_CVHNL|REPLICASE polyprotein 1a|Human coronavirus NL63 (HCoV-NL63)

Query: 2    LVHGGPCDK 10
            L HG  CD+
Sbjct: 4031 LGHGCACDR 4039


>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)

Query: 2    LVHGGPCDK 10
            L HG  CD+
Sbjct: 4056 LNHGCTCDR 4064


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    LVHGGPCDK 10
            L HG  CD+
Sbjct: 4031 LGHGCACDR 4039


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    LVHGGPCDK 10
            L HG  CD+
Sbjct: 4056 LNHGCTCDR 4064


>sp|DPOL_HBVD6|PROTEIN P|Hepatitis B virus genotype D

Query: 6   GPCDK 10
           GPCD+
Sbjct: 339 GPCDE 343


>sp|RDRP_ROTGI|RNA-DIRECTED RNA polymerase|Rotavirus B (isolate RVB/Rat/United

Query: 2   LVHGGPCD 9
           LVH  P D
Sbjct: 258 LVHANPID 265


>sp|UL13_HHV11|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 1 (strain 17)

Query: 1   KLVHGGPCDK 10
           +L H  PC +
Sbjct: 505 RLCHTNPCAR 514


>sp|VL2_HPV38|MINOR capsid protein L2|Human papillomavirus 38

Query: 3   VHGGPCD 9
           VH GP D
Sbjct: 139 VHPGPID 145


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 2    LVHGGP 7
            L+HG P
Sbjct: 1258 LIHGSP 1263


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 2    LVHGGP 7
            L+HG P
Sbjct: 1224 LIHGSP 1229


>sp|DPOL_HBVA2|PROTEIN P|Hepatitis B virus genotype A2

Query: 6   GPCD 9
           GPCD
Sbjct: 345 GPCD 348


>sp|GP_BUNYW|ENVELOPMENT polyprotein|Bunyamwera virus (BUNV)

Query: 6    GPCD 9
            GPCD
Sbjct: 1289 GPCD 1292


>sp|L_ISFV|RNA-DIRECTED RNA polymerase L|Isfahan virus (ISFV)

Query: 1    KLVHGGPC 8
            ++ HGG C
Sbjct: 1223 RMSHGGFC 1230


>sp|PHOSP_NIPAV|PHOSPHOPROTEIN virus

Query: 4   HGGPC 8
           HGG C
Sbjct: 119 HGGEC 123


>sp|VTF3L_VACCT|INTERMEDIATE transcription factor 3 large|Vaccinia virus (strain Tian Tan)

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VTF3L_VACCA|INTERMEDIATE transcription factor 3 large|Vaccinia virus (strain Ankara) (VACV)

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VTF3L_MONPZ|INTERMEDIATE transcription factor 3 large|Monkeypox virus (strain Zaire-96-I-16)

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VITF3_VARV|INTERMEDIATE transcription factor 3 large|Variola virus

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VITF3_VAR67|INTERMEDIATE transcription factor 3 large|Variola virus (isolate

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VITF3_VACCC|INTERMEDIATE transcription factor 3 large|Vaccinia virus (strain Copenhagen)

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|VITF3_MONPV|INTERMEDIATE transcription factor 3 large|Monkeypox virus (MPXV)

Query: 1   KLVHGG 6
           K VHGG
Sbjct: 139 KTVHGG 144


>sp|US03_HHV11|SERINE/THREONINE-PROTEIN kinase US3|Human herpesvirus 1 (strain 17)

Query: 6   GPCD 9
           GPCD
Sbjct: 392 GPCD 395


>sp|EBNA4_EBVA8|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   KLVHGGP 7
           K  HGGP
Sbjct: 889 KTPHGGP 895


>sp|NRAM_I60A0|NEURAMINIDASE A virus (strain A/Ann

Query: 1   KLVHGGP 7
           K+VH GP
Sbjct: 261 KIVHIGP 267


>sp|PHOSP_HENDH|PHOSPHOPROTEIN virus (isolate Horse/Autralia/Hendra/1994)

Query: 4   HGGPC 8
           HGG C
Sbjct: 119 HGGEC 123


>sp|NRAM_I57A0|NEURAMINIDASE A virus (strain A/Japan/305/1957

Query: 1   KLVHGGP 7
           K+VH GP
Sbjct: 261 KIVHIGP 267


>sp|NCAP_SARS2|NUCLEOPROTEIN acute respiratory syndrome coronavirus

Query: 1  KLVHGGPCD 9
          ++  GGP D
Sbjct: 14 RITFGGPSD 22


>sp|W_NIPAV|PROTEIN W|Nipah virus

Query: 4   HGGPC 8
           HGG C
Sbjct: 119 HGGEC 123


>sp|VIRF1_HHV8P|VIRF-1 herpesvirus 8 type P

Query: 5  GGPCDK 10
          G PCD+
Sbjct: 33 GAPCDE 38




6|Sequence|26|35|GPCDKTSHPY

>sp|L_LYCVA|RNA-DIRECTED RNA polymerase L|Lymphocytic choriomeningitis virus (strain

Query: 3    CDKTSHP 9
            CDK SHP
Sbjct: 1656 CDKQSHP 1662


>sp|HELI_HHV6U|DNA replication helicase|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   CDKTSHPY 10
           CD+T H Y
Sbjct: 498 CDQTIHAY 505


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 1   GPCDKTSHP 9
           GP D  +HP
Sbjct: 535 GPVDPRTHP 543


>sp|CAPSD_TTVV9|CAPSID protein|Torque teno virus (isolate Japanese

Query: 2   PCDKTSHP 9
           PC + +HP
Sbjct: 565 PCKQPTHP 572


>sp|SPIKE_CVH22|SPIKE glycoprotein|Human coronavirus 229E (HCoV-229E)

Query: 1    GPCDKTSHPY 10
            G C+ T  PY
Sbjct: 1155 GCCESTKLPY 1164


>sp|GP_ANDV|ENVELOPMENT polyprotein|Andes orthohantavirus (ANDV) (Andes virus)

Query: 1   GPCDKTSHPY 10
           G C K S+P+
Sbjct: 740 GACQKYSYPW 749


>sp|SPIK2_ADE41|FIBER protein 2|Human adenovirus F serotype 41

Query: 2   PCDKTSHP 9
           P +KT+HP
Sbjct: 329 PRNKTAHP 336


>sp|GP_PUUMS|ENVELOPMENT polyprotein|Puumala virus (strain Sotkamo/V-2969/81)

Query: 1   GPCDKTSHPY 10
           G C+K ++P+
Sbjct: 747 GSCEKYAYPW 756


>sp|GP_PUUMG|ENVELOPMENT polyprotein|Puumala virus (strain Bank vole/Russia/CG1820/1984)

Query: 1   GPCDKTSHPY 10
           G C+K ++P+
Sbjct: 747 GSCEKYAYPW 756


>sp|GP_PUUMP|ENVELOPMENT polyprotein|Puumala virus (strain P360)

Query: 1   GPCDKTSHPY 10
           G C+K ++P+
Sbjct: 747 GSCEKYAYPW 756


>sp|GP_PUUMK|ENVELOPMENT polyprotein|Puumala virus (strain K27)

Query: 1   GPCDKTSHPY 10
           G C+K ++P+
Sbjct: 747 GSCEKYAYPW 756


>sp|GP_BCCV|ENVELOPMENT polyprotein|Black Creek Canal orthohantavirus (BCCV)

Query: 1   GPCDKTSHPY 10
           G C K S+P+
Sbjct: 743 GECKKYSYPW 752


>sp|VE2_HPV27|REGULATORY protein E2|Human papillomavirus 27

Query: 1   GPCDKTS 7
           G CDKT+
Sbjct: 346 GKCDKTA 352


>sp|RP35_VAR67|DNA-DIRECTED RNA polymerase 35 kDa|Variola virus (isolate Human/India/Ind3/1967)

Query: 1   GPCDKTSHPY 10
           G CD+T   Y
Sbjct: 235 GDCDETVSSY 244


>sp|RP35_VACCT|DNA-DIRECTED RNA polymerase 35 kDa|Vaccinia virus (strain Tian Tan)

Query: 1   GPCDKTSHPY 10
           G CD+T   Y
Sbjct: 235 GDCDETVSSY 244


>sp|RP35_VACCC|DNA-DIRECTED RNA polymerase 35 kDa|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   GPCDKTSHPY 10
           G CD+T   Y
Sbjct: 235 GDCDETVSSY 244


>sp|RP35_MONPV|DNA-DIRECTED RNA polymerase 35 kDa|Monkeypox virus (MPXV)

Query: 1   GPCDKTSHPY 10
           G CD+T   Y
Sbjct: 235 GDCDETVSSY 244


>sp|HELI_HHV6Z|DNA replication helicase|Human herpesvirus 6B (strain Z29)

Query: 3   CDKTSHPY 10
           C++T H Y
Sbjct: 498 CEQTIHAY 505


>sp|US06_HCMVT|UNIQUE short US6 glycoprotein|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 2   PCDKTSHP 9
           PCD   HP
Sbjct: 109 PCDLDIHP 116


>sp|US06_HCMVA|UNIQUE short US6 glycoprotein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   PCDKTSHP 9
           PCD   HP
Sbjct: 109 PCDLDIHP 116


>sp|US06_HCMVM|UNIQUE short US6 glycoprotein|Human cytomegalovirus (strain Merlin)

Query: 2   PCDKTSHP 9
           PCD   HP
Sbjct: 108 PCDLDIHP 115


>sp|RP35_VACCA|DNA-DIRECTED RNA polymerase 35 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 1   GPCDKTSHPY 10
           G CD+T   Y
Sbjct: 235 GNCDETVSSY 244


>sp|NPH2_MCV1|RNA helicase NPH-II|Molluscum contagiosum virus subtype 1

Query: 2   PCDKTSHPY 10
           PC   S PY
Sbjct: 457 PCVLVSTPY 465


>sp|VL1_HPV50|MAJOR capsid protein L1|Human papillomavirus type 50

Query: 2   PCDKTS 7
           PCDK S
Sbjct: 173 PCDKNS 178


>sp|PG145_MONPV|TRANSCRIPT termination protein OPG145|Monkeypox virus (MPXV)

Query: 2  PCDKTS 7
          PC KTS
Sbjct: 53 PCVKTS 58


>sp|RIR1_HHV11|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 1 (strain 17)

Query: 2    PCDKTSHP 9
            PC + +HP
Sbjct: 1038 PCLEPTHP 1045


>sp|POLG_HKV1|GENOME polyprotein|Human klassevirus 1 (HKV-1)

Query: 3    CDKTSHPY 10
            CD T  PY
Sbjct: 2343 CDATFTPY 2350


>sp|LT_POVBK|LARGE T antigen|BK polyomavirus (BKPyV) (Human polyomavirus

Query: 3   CDKTSHPY 10
           C K   PY
Sbjct: 307 CQKKDQPY 314


>sp|LT_POVBA|LARGE T antigen|BK polyomavirus (strain AS) (BKPyV)

Query: 3   CDKTSHPY 10
           C K   PY
Sbjct: 307 CQKKDQPY 314




7|Sequence|31|40|TSHPYQAALY

>sp|PHOSP_VSIVM|PHOSPHOPROTEIN stomatitis Indiana virus (strain

Query: 2   SHPYQA 7
           +HPYQ+
Sbjct: 186 THPYQS 191


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 2    SHPYQAA 8
            S PY+AA
Sbjct: 2157 SRPYKAA 2163


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 2    SHPYQAA 8
            S PY+AA
Sbjct: 2157 SRPYKAA 2163


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 2    SHPYQAA 8
            S PY+AA
Sbjct: 2153 SRPYKAA 2159


>sp|OBP_VZVO|REPLICATION origin-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 1   TSHPYQAALY 10
           T H Y  AL+
Sbjct: 705 TKHEYNIALF 714


>sp|OBP_VZVD|REPLICATION origin-binding protein|Varicella-zoster virus (strain Dumas)

Query: 1   TSHPYQAALY 10
           T H Y  AL+
Sbjct: 705 TKHEYNIALF 714




8|Sequence|36|45|QAALYTSGHL

>sp|NCAP_VSNJO|NUCLEOPROTEIN stomatitis New Jersey virus

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|NCAP_VSIVS|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|NCAP_VSIVN|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|NCAP_VSIVG|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|NCAP_VSIVC|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|NCAP_VSIVA|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 2   AALYTSGHL 10
           AAL T GHL
Sbjct: 226 AALATFGHL 234


>sp|ENV_HV1Y2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 3   ALYTSGHL 10
           ALYT+G +
Sbjct: 310 ALYTTGEI 317


>sp|SCAF_VZVD|CAPSID scaffolding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3  ALYTSGHL 10
          ALY +G+L
Sbjct: 12 ALYVAGYL 19


>sp|ENV_HV1MA|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 3   ALYTSG 8
           ALYT+G
Sbjct: 319 ALYTTG 324


>sp|RIR2_HHV8P|RIBONUCLEOSIDE-DIPHOSPHATE reductase small subunit|Human herpesvirus 8 type P

Query: 4  LYTSGH 9
          LYTS H
Sbjct: 8  LYTSDH 13




9|Sequence|41|50|TSGHLLCGGV

>sp|POLG_MVEV5|GENOME polyprotein|Murray valley encephalitis virus (strain

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 574 TSGHLKC 580


>sp|POLG_WNV9|GENOME polyprotein|West Nile virus (strain NY-99)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 572 TSGHLKC 578


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 569 TSGHLKC 575


>sp|POLG_KUNJM|GENOME polyprotein|Kunjin virus (strain MRM61C)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 572 TSGHLKC 578


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLG_WNV|GENOME polyprotein|West Nile virus (WNV)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 568 TSGHLKC 574


>sp|POLG_USUV|GENOME polyprotein|Usutu virus (USUV)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 574 TSGHLKC 580


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLG_ROCV|GENOME polyprotein|Rocio virus (ROCV)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 567 TSGHLKC 573


>sp|POLG_JAEVN|GENOME polyprotein|Japanese encephalitis virus (strain Nakayama)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 503 TSGHLKC 509


>sp|POLS_JAEVM|STRUCTURAL polyprotein|Japanese encephalitis virus (strain M28)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLS_JAEVJ|STRUCTURAL polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLS_JAEV1|STRUCTURAL polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLS_JAEV5|STRUCTURAL polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 1   TSGHLLC 7
           TSGHL C
Sbjct: 575 TSGHLKC 581


>sp|POLG_BUSV|GENOME polyprotein|Bussuquara virus (BUSV)

Query: 1   TSGHLLC 7
           T+GHL C
Sbjct: 576 TAGHLKC 582


>sp|VE2_HPV40|REGULATORY protein E2|Human papillomavirus 40

Query: 2   SGHLLCGG 9
           +GH  CGG
Sbjct: 279 NGHRNCGG 286


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 1   TSGHLLC 7
           +SGHL C
Sbjct: 575 SSGHLKC 581


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 1   TSGHLLC 7
           +SGHL C
Sbjct: 575 SSGHLKC 581


>sp|TEG4_VZVO|TEGUMENT protein UL21 homolog|Varicella-zoster virus (strain Oka vaccine)

Query: 1  TSGHLLCGG 9
          T  + +CGG
Sbjct: 23 TRAYFICGG 31


>sp|TEG4_VZVD|TEGUMENT protein UL21 homolog|Varicella-zoster virus (strain Dumas)

Query: 1  TSGHLLCGG 9
          T  + +CGG
Sbjct: 23 TRAYFICGG 31


>sp|TRM1_EBVB9|TRIPARTITE terminase subunit 1|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 5   LLCGGV 10
           L CGGV
Sbjct: 343 LFCGGV 348


>sp|U79_HHV7J|PROTEIN U79|Human herpesvirus 7 (strain JI)

Query: 3  GHLLC 7
          GH+LC
Sbjct: 89 GHILC 93


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 2   SGHLLC 7
           SGHL C
Sbjct: 571 SGHLKC 576


>sp|POLG_ILHV|GENOME polyprotein|Ilheus virus (ILHV)

Query: 2   SGHLLC 7
           SGHL C
Sbjct: 568 SGHLKC 573


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 2   SGHLLC 7
           SGHL C
Sbjct: 572 SGHLKC 577


>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 2   SGHLLC 7
           SGHL C
Sbjct: 569 SGHLKC 574


>sp|GP_HTRV|ENVELOPMENT polyprotein|Heartland virus (HTRV)

Query: 1   TSGHLLC 7
           T+GHL C
Sbjct: 941 TTGHLKC 947




10|Sequence|46|55|LCGGVLIHPL

>sp|POLG_HPEV5|GENOME polyprotein|Human parechovirus 5 (strain CT86-6760)

Query: 1    LCGGVLI 7
            +CGG+LI
Sbjct: 1677 MCGGLLI 1683


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 1    LCGGVLI 7
            +CGG+LI
Sbjct: 1668 MCGGLLI 1674


>sp|POLG_HPE1H|GENOME polyprotein|Human parechovirus 1 (strain Harris)

Query: 1    LCGGVLI 7
            +CGG+LI
Sbjct: 1669 MCGGLLI 1675


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 1    LCGGVLIHPL 10
             CGG ++H +
Sbjct: 2368 FCGGFILHDI 2377


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 1    LCGGVLIH 8
             CGG ++H
Sbjct: 2407 FCGGFILH 2414


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 1    LCGGVLIH 8
             CGG ++H
Sbjct: 2407 FCGGFILH 2414


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 1    LCGGVLIH 8
             CGG ++H
Sbjct: 2408 FCGGFILH 2415


>sp|VP4_ROTHC|OUTER capsid protein VP4|Rotavirus C (isolate RVC/Human/United

Query: 3   GGVLIHPL 10
           GG+LI P+
Sbjct: 168 GGILIKPI 175


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1   LCGGVLI 7
           LCGGV++
Sbjct: 280 LCGGVML 286


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1   LCGGVLI 7
           LCGGV++
Sbjct: 280 LCGGVML 286


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 1    LCGGVLI 7
            +CGG+L+
Sbjct: 1738 MCGGLLV 1744


>sp|POLN_HEVMG|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 1   LCGGVLIHP 9
           L GG+ +HP
Sbjct: 664 LTGGLWLHP 672


>sp|POLG_HCVJ5|GENOME polyprotein|Hepatitis C virus (isolate HC-J5)

Query: 1   LCGGVLI 7
           LCGGV++
Sbjct: 280 LCGGVML 286


>sp|POLN_HEVUS|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 1   LCGGVLIHP 9
           L GG+ +HP
Sbjct: 664 LTGGLWLHP 672


>sp|POLG_ECHO9|GENOME polyprotein|Echo 9 virus (EV-9) (Coxsackievirus

Query: 2   CGGVLI 7
           CGGVL+
Sbjct: 169 CGGVLM 174


>sp|POLG_EC30B|GENOME polyprotein|Echovirus 30 (strain Bastianni)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1696 CGGVLM 1701


Query: 2   CGGVL 6
           CGG+L
Sbjct: 970 CGGIL 974


>sp|POLG_EC12T|GENOME polyprotein|Echovirus 12 (strain Travis)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1695 CGGVLM 1700


Query: 2   CGGVL 6
           CGG+L
Sbjct: 969 CGGIL 973


>sp|POLG_EC11G|GENOME polyprotein|Echovirus 11 (strain Gregory)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1697 CGGVLM 1702


Query: 2   CGGVL 6
           CGG+L
Sbjct: 971 CGGIL 975


>sp|POLG_EC09H|GENOME polyprotein|Echovirus 9 (strain Hill)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1695 CGGVLM 1700


Query: 2   CGGVL 6
           CGG+L
Sbjct: 969 CGGIL 973


>sp|POLG_EC09B|GENOME polyprotein|Echovirus 9 (strain Barty)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1705 CGGVLM 1710


Query: 2   CGGVL 6
           CGG+L
Sbjct: 979 CGGIL 983


>sp|POLG_EC06C|GENOME polyprotein|Echovirus 6 (strain Charles)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1693 CGGVLM 1698


Query: 2   CGGVL 6
           CGG+L
Sbjct: 967 CGGIL 971


>sp|POLG_EC05N|GENOME polyprotein|Echovirus 5 (strain Noyce)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1698 CGGVLM 1703


Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_EC01F|GENOME polyprotein|Echovirus 1 (strain Human/Egypt/Farouk/1951) (E-1)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1686 CGGVLM 1691


Query: 2   CGGVL 6
           CGG+L
Sbjct: 960 CGGIL 964


>sp|POLG_CXB6S|GENOME polyprotein|Coxsackievirus B6 (strain Schmitt)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1686 CGGVLM 1691


Query: 2   CGGVL 6
           CGG+L
Sbjct: 960 CGGIL 964


>sp|POLG_CXB5P|GENOME polyprotein|Coxsackievirus B5 (strain Peterborough /

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1687 CGGVLM 1692


Query: 2   CGGVL 6
           CGG+L
Sbjct: 961 CGGIL 965


>sp|POLG_CXB4J|GENOME polyprotein|Coxsackievirus B4 (strain JVB /

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1685 CGGVLM 1690


Query: 2   CGGVL 6
           CGG+L
Sbjct: 959 CGGIL 963


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1685 CGGVLM 1690


Query: 2   CGGVL 6
           CGG+L
Sbjct: 959 CGGIL 963


>sp|POLG_CXB3W|GENOME polyprotein|Coxsackievirus B3 (strain Woodruff)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1687 CGGVLM 1692


Query: 2   CGGVL 6
           CGG+L
Sbjct: 961 CGGIL 965


>sp|POLG_CXB3N|GENOME polyprotein|Coxsackievirus B3 (strain Nancy)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1687 CGGVLM 1692


Query: 2   CGGVL 6
           CGG+L
Sbjct: 961 CGGIL 965


>sp|POLG_CXB2O|GENOME polyprotein|Coxsackievirus B2 (strain Ohio-1)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1689 CGGVLM 1694


Query: 2   CGGVL 6
           CGG+L
Sbjct: 963 CGGIL 967


>sp|POLG_CXB1J|GENOME polyprotein|Coxsackievirus B1 (strain Japan)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1684 CGGVLM 1689


Query: 2   CGGVL 6
           CGG+L
Sbjct: 958 CGGIL 962


>sp|POLG_CXA9|GENOME polyprotein|Coxsackievirus A9 (strain Griggs)

Query: 2    CGGVLI 7
            CGGVL+
Sbjct: 1703 CGGVLM 1708


Query: 2   CGGVL 6
           CGG+L
Sbjct: 977 CGGIL 981


>sp|NS1_HBOC3|INITIATOR protein NS1|Human bocavirus 3 (HBoV3) (Adelavirus

Query: 2   CGGVLIH 8
           CGG L H
Sbjct: 610 CGGYLAH 616


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1668 CGGVL 1672


>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1682 CGGVL 1686


Query: 2   CGGVL 6
           CGG+L
Sbjct: 964 CGGIL 968


>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1654 CGGVL 1658


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1661 CGGVL 1665


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1661 CGGVL 1665


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1657 CGGVL 1661


>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)

Query: 2    CGGVL 6
            CGGVL
Sbjct: 1683 CGGVL 1687


Query: 2   CGGVL 6
           CGG+L
Sbjct: 965 CGGIL 969


>sp|POLG_HE701|GENOME polyprotein|Human enterovirus 70 (strain J670/71)

Query: 2   CGGVLI 7
           CGG+L+
Sbjct: 974 CGGLLV 979


>sp|EBNA4_EBVA8|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 3   GGVLIHPL 10
           GG  +HPL
Sbjct: 193 GGDKVHPL 200


>sp|SCAF_HHV8P|CAPSID scaffolding protein|Human herpesvirus 8 type P

Query: 3   GGVLIHP 9
           GG  +HP
Sbjct: 423 GGTYVHP 429


>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 860 CGGIL 864


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 860 CGGIL 864


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 2   CGGVL 6
           CGG+L
Sbjct: 987 CGGIL 991


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1709 CGGVI 1713


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 987 CGGIL 991


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1709 CGGVI 1713


>sp|POLG_POL2W|GENOME polyprotein|Poliovirus type 2 (strain W-2)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 988 CGGIL 992


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1710 CGGVI 1714


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 988 CGGIL 992


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1710 CGGVI 1714


>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 990 CGGIL 994


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1712 CGGVI 1716


>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 990 CGGIL 994


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1712 CGGVI 1716


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_HE71B|GENOME polyprotein|Human enterovirus 71 (strain USA/BrCr/1970)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 995 CGGIL 999


Query: 2    CGGVL 6
            CGGV+
Sbjct: 1717 CGGVI 1721


>sp|POLG_CXA21|GENOME polyprotein|Coxsackievirus A21 (strain Coe)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 988 CGGIL 992


>sp|POLG_CX16T|GENOME polyprotein|Coxsackievirus A16 (strain Tainan/5079/98)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 972 CGGIL 976


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 2    CGGVLIHPL 10
            CGG+++  L
Sbjct: 1319 CGGIMLLSL 1327


>sp|L_LASV|RNA-DIRECTED RNA polymerase L|Mammarenavirus lassaense

Query: 1    LCGGVL 6
            +CGGV+
Sbjct: 1322 ICGGVV 1327


>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)

Query: 2    CGGVLIH 8
            CG  LIH
Sbjct: 1785 CGKKLIH 1791


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2    CGGVLIH 8
            CG  LIH
Sbjct: 1785 CGKKLIH 1791


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 1   LCGGVLIHP 9
           L GG+  HP
Sbjct: 664 LIGGLWYHP 672


>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2  CGGVLIHPL 10
          CG +  +PL
Sbjct: 20 CGYIYFYPL 28


>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2  CGGVLIHPL 10
          CG +  +PL
Sbjct: 20 CGYIYFYPL 28


>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2  CGGVLIHPL 10
          CG +  +PL
Sbjct: 20 CGYIYFYPL 28


>sp|POLG_HRV15|GENOME polyprotein|Human rhinovirus C (strain C15)

Query: 2    CGGVL 6
            CGGV+
Sbjct: 1657 CGGVI 1661


>sp|UL24_VZVO|PROTEIN UL24 homolog|Varicella-zoster virus (strain Oka vaccine)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 244 CGGIL 248


>sp|UL24_VZVD|PROTEIN UL24 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   CGGVL 6
           CGG+L
Sbjct: 244 CGGIL 248




11|Sequence|51|60|LIHPLWVLTA

>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 2    IHPLW 6
            IHP+W
Sbjct: 1932 IHPIW 1936


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 2    IHPLW 6
            IHP+W
Sbjct: 1935 IHPIW 1939


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 2    IHPLW 6
            IHP+W
Sbjct: 1939 IHPVW 1943


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 2    IHPLW 6
            IHP+W
Sbjct: 1939 IHPVW 1943


>sp|ITP_EBVG|INNER tegument protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   HPLWVLTA 10
           HPLW  T+
Sbjct: 888 HPLWAHTS 895


>sp|VE1_HPV48|REPLICATION protein E1|Human papillomavirus type 48

Query: 4   PLWVLTA 10
           P WV+TA
Sbjct: 182 PNWVITA 188


>sp|POLG_HRV15|GENOME polyprotein|Human rhinovirus C (strain C15)

Query: 2    IHPLW 6
            +HP+W
Sbjct: 1934 LHPIW 1938


>sp|MCP_HCMVM|MAJOR capsid protein|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2    IHPLWVLTA 10
            IHP + LTA
Sbjct: 1028 IHPGFALTA 1036


>sp|MCP_HCMVA|MAJOR capsid protein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2    IHPLWVLTA 10
            IHP + LTA
Sbjct: 1028 IHPGFALTA 1036


>sp|VE1_HPV17|REPLICATION protein E1|Human papillomavirus 17

Query: 3   HPLWVLT 9
           +P W+LT
Sbjct: 295 YPEWILT 301


>sp|VE1_HPV09|REPLICATION protein E1|Human papillomavirus 9

Query: 3   HPLWVLT 9
           +P W+LT
Sbjct: 291 YPEWILT 297


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 2    IHPLW 6
            +HP+W
Sbjct: 1946 LHPVW 1950


>sp|ITP_EBVB9|INNER tegument protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   HPLWVLTA 10
           HPLW  T+
Sbjct: 891 HPLWAHTS 898


>sp|ITP_EBVA8|INNER tegument protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 3   HPLWVLTA 10
           HPLW  T+
Sbjct: 892 HPLWAHTS 899


>sp|ITP_HHV8P|INNER tegument protein|Human herpesvirus 8 type P

Query: 4   PLWVLT 9
           P+W+LT
Sbjct: 177 PMWILT 182


>sp|MCP_VZVD|MAJOR capsid protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3   HPLWV 7
           HP WV
Sbjct: 534 HPHWV 538


>sp|POLS_BFV|STRUCTURAL polyprotein|Barmah forest virus (BFV)

Query: 2   IHPLWVLT 9
           ++P W +T
Sbjct: 681 LYPYWTIT 688


>sp|VP7_CTFVL|UNCHARACTERIZED protein VP7|Colorado tick fever virus (strain

Query: 1   LIHPLWV 7
           LIH  WV
Sbjct: 236 LIHGSWV 242


>sp|L_SABVB|RNA-DIRECTED RNA polymerase L|Sabia mammarenavirus (isolate

Query: 1    LIHPLW 6
            L+H LW
Sbjct: 2123 LLHGLW 2128




12|Sequence|56|65|WVLTAAHCKK

>sp|PG085_MCV1|PROBABLE metalloendopeptidase G1-type|Molluscum contagiosum virus subtype 1

Query: 1   WVLTAAHC 8
           W L + HC
Sbjct: 562 WQLVSKHC 569


>sp|FUS_PIV5|FUSION glycoprotein F0|Parainfluenza virus 5 (strain W3)

Query: 3   LTAAHCK 9
           +TAA+CK
Sbjct: 180 ITAANCK 186


>sp|NEC2_HHV6U|NUCLEAR egress protein 2|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   WVLTAAHCK 9
           W L+  HC+
Sbjct: 237 WRLSERHCR 245


>sp|NSS_SFTSV|NON-STRUCTURAL protein NS-S|SFTS phlebovirus (isolate SFTSV/Human/China/HB29/2010)

Query: 1   WVLTAAH 7
           W L AAH
Sbjct: 109 WFLQAAH 115


>sp|HEPA_HHV8P|DNA helicase/primase complex-associated protein|Human herpesvirus 8

Query: 1   WVLTAAHCK 9
           W++  +HC+
Sbjct: 580 WLIPLSHCE 588


>sp|ORF10_HHV8P|PROTEIN ORF10|Human herpesvirus 8 type P

Query: 1  WVLTAAHCK 9
          W +T ++C+
Sbjct: 12 WEITVSNCR 20


>sp|L_NIPAV|RNA-DIRECTED RNA polymerase L|Nipah virus

Query: 1   WVLTAA 6
           W++TAA
Sbjct: 985 WLITAA 990


>sp|POLG_YEFVU|GENOME polyprotein|Yellow fever virus (isolate Uganda/A7094A4/1948)

Query: 1    WVLTAAHCK 9
            WVL   H K
Sbjct: 3328 WVLNNPHMK 3336


>sp|POLG_YEFVE|GENOME polyprotein|Yellow fever virus (isolate Ethiopia/Couma/1961)

Query: 1    WVLTAAHCK 9
            WVL   H K
Sbjct: 3328 WVLNNPHMK 3336




13|Sequence|61|70|AHCKKPNLQV

>sp|GH_HHV6U|ENVELOPE glycoprotein H|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   CKKPN 7
           CKKPN
Sbjct: 283 CKKPN 287


>sp|GH_HHV6G|ENVELOPE glycoprotein H|Human herpesvirus 6A (strain GS)

Query: 3   CKKPN 7
           CKKPN
Sbjct: 283 CKKPN 287


>sp|ENV_HV2EH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 302 HCKRP 306


>sp|ENV_HV2KR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 296 HCKRP 300


>sp|ENV_HV2D2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 304 HCKRP 308


>sp|ENV_HV2ST|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 298 HCKRP 302


>sp|ENV_HV2D1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 293 HCKRP 297


>sp|ENV_HV2NZ|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 294 HCKRP 298


>sp|ENV_HV2RO|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 304 HCKRP 308


>sp|NS1_HRSVA|NON-STRUCTURAL protein 1|Human respiratory syncytial virus A

Query: 2   HCKKPN 7
           HC +PN
Sbjct: 97  HCSQPN 102


>sp|NS1_HRSS2|NON-STRUCTURAL protein 1|Human respiratory syncytial virus A

Query: 2   HCKKPN 7
           HC +PN
Sbjct: 97  HCSQPN 102


>sp|NS1_HRSV|NON-STRUCTURAL protein 1|Human respiratory syncytial virus

Query: 2   HCKKPN 7
           HC +PN
Sbjct: 97  HCSQPN 102


>sp|ENV_HTLV2|ENVELOPE glycoprotein gp63|Human T-cell leukemia virus 2

Query: 2   HCKKPNLQ 9
           HC +P LQ
Sbjct: 271 HCYQPRLQ 278


>sp|ENV_HV2G1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HCK+P
Sbjct: 295 HCKRP 299


>sp|POLG_HPEV5|GENOME polyprotein|Human parechovirus 5 (strain CT86-6760)

Query: 2   HCKKPNL 8
           +C KPN+
Sbjct: 974 YCHKPNI 980


>sp|POLG_HPE1H|GENOME polyprotein|Human parechovirus 1 (strain Harris)

Query: 2   HCKKPNL 8
           +C KPN+
Sbjct: 966 YCHKPNI 972


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 2   HCKKPNL 8
           +C KPN+
Sbjct: 965 YCHKPNI 971


>sp|L_MEASC|RNA-DIRECTED RNA polymerase L|Measles virus (strain Ichinose-B95a) (MeV)

Query: 3   CKKPNLQV 10
           CK PN Q+
Sbjct: 723 CKVPNDQI 730


>sp|ENV_HV2UC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2   HCKKP 6
           HC++P
Sbjct: 303 HCRRP 307


>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)

Query: 5    KPNLQV 10
            +PNLQV
Sbjct: 3152 QPNLQV 3157


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 5    KPNLQV 10
            +PNLQV
Sbjct: 3152 QPNLQV 3157


>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 2    HCKKPNLQV 10
            H K P L+V
Sbjct: 1775 HSKDPRLEV 1783


>sp|NRAM_I96A1|NEURAMINIDASE A virus (strain A/Niigata/137/1996

Query: 1   AHCKKPN 7
           +HC  PN
Sbjct: 335 SHCLNPN 341


>sp|GH_HHV6Z|ENVELOPE glycoprotein H|Human herpesvirus 6B (strain Z29)

Query: 3   CKKPN 7
           CKKP+
Sbjct: 283 CKKPD 287


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 1    AHCKKPN 7
            A C +PN
Sbjct: 2274 AECHRPN 2280


>sp|NRAM_I76A6|NEURAMINIDASE A virus (strain A/Memphis/110/1976

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I76AB|NEURAMINIDASE A virus (strain A/Swine/Hong

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I75A0|NEURAMINIDASE A virus (strain A/Beijing/39/1975

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I79A0|NEURAMINIDASE A virus (strain A/Bangkok/1/1979

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I78A8|NEURAMINIDASE A virus (strain A/Memphis/18/1978

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I75A3|NEURAMINIDASE A virus (strain A/Victoria/3/1975

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I73A5|NEURAMINIDASE A virus (strain A/Port

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I72A8|NEURAMINIDASE A virus (strain A/Udorn/1972

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I72A4|NEURAMINIDASE A virus (strain A/Memphis/101/1972

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I72A3|NEURAMINIDASE A virus (strain A/Memphis/102/1972

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I72A2|NEURAMINIDASE A virus (strain A/Udorn/307/1972

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I78A7|NEURAMINIDASE A virus (strain A/Memphis/2/1978

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|PG209_MONPV|PROTEIN OPG209|Monkeypox virus (MPXV)

Query: 3   CKKPN 7
           CKKP+
Sbjct: 120 CKKPS 124


>sp|NEC2_HCMVA|NUCLEAR egress protein 2|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3  CKKPNLQV 10
          CK PN  V
Sbjct: 35 CKNPNYSV 42


>sp|NRAM_I77AH|NEURAMINIDASE A virus (strain A/Texas/1/1977

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NEC2_HCMVM|NUCLEAR egress protein 2|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3  CKKPNLQV 10
          CK PN  V
Sbjct: 35 CKNPNYSV 42


>sp|NRAM_I80A4|NEURAMINIDASE A virus (strain A/Memphis/4/1980

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I83A8|NEURAMINIDASE A virus (strain A/Hong

Query: 1   AHCKKPN 7
           ++C+ PN
Sbjct: 335 SYCRNPN 341


>sp|NRAM_I82A7|NEURAMINIDASE A virus (strain A/Swine/Hong

Query: 3   CKKPN 7
           CK PN
Sbjct: 314 CKNPN 318


>sp|PG043_MONPV|MONOGLYCERIDE lipase homolog|Monkeypox virus (MPXV)

Query: 1   AHCKKPNL 8
           A C  PNL
Sbjct: 115 AACDNPNL 122


>sp|AN_HHV6Z|ALKALINE nuclease|Human herpesvirus 6B (strain Z29)

Query: 3   CKKPNLQV 10
           CK+ +LQV
Sbjct: 461 CKQTSLQV 468




14|Sequence|66|75|PNLQVFLGKH

>sp|AN_HHV2|ALKALINE nuclease|Human herpesvirus 2 (HHV-2) (Human

Query: 1   PNLQVFLGKH 10
           P+L  FLG+H
Sbjct: 511 PHLVTFLGRH 520


>sp|AN_HHV11|ALKALINE nuclease|Human herpesvirus 1 (strain 17)

Query: 1   PNLQVFLGKH 10
           P+L  F+G+H
Sbjct: 521 PHLVTFIGRH 530


>sp|MB43_HHV11|MEMBRANE protein UL43|Human herpesvirus 1 (strain 17)

Query: 4   QVFLGKH 10
           QVFLG H
Sbjct: 300 QVFLGGH 306


>sp|POLG_HPE1H|GENOME polyprotein|Human parechovirus 1 (strain Harris)

Query: 1   PNLQVFLGKH 10
           PNL VF+  +
Sbjct: 412 PNLNVFVNSY 421


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 1   PNLQVF 6
           PNL+VF
Sbjct: 413 PNLKVF 418


>sp|CAPSD_HASV4|CAPSID polyprotein VP90|Human astrovirus-4 (HAstV-4)

Query: 1   PNLQVFLGKH 10
           P L V++G H
Sbjct: 504 PELGVYIGIH 513


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 1    PNLQVFLGKH 10
            P L+ F  KH
Sbjct: 1759 PKLEQFWAKH 1768


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    PNLQVFLGKH 10
            P L+ F  KH
Sbjct: 1759 PKLEQFWAKH 1768


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 1    PNLQVFLGKH 10
            P L+ F  KH
Sbjct: 1759 PKLEQFWAKH 1768


>sp|VP2_ROTJ1|INNER capsid protein VP2|Rotavirus X (strain

Query: 1   PNLQVFLG 8
           P+LQ+F G
Sbjct: 960 PDLQLFNG 967


>sp|VP2_ROTB2|INNER capsid protein VP2|Rotavirus X (isolate

Query: 1   PNLQVFLG 8
           P+LQ+F G
Sbjct: 960 PDLQLFNG 967


>sp|MB43_HHV2H|MEMBRANE protein UL43|Human herpesvirus 2 (strain HG52)

Query: 4   QVFLGKH 10
           QVF+G H
Sbjct: 299 QVFVGGH 305


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    LQVFLGKH 10
            L+VF  KH
Sbjct: 1757 LEVFWAKH 1764


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 3    LQVFLGKH 10
            L+VF  KH
Sbjct: 1757 LEVFWAKH 1764


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 3   LQVFLGKH 10
           L+VF G H
Sbjct: 345 LEVFAGGH 352


>sp|ETF2_YMTV5|EARLY transcription factor 82 kDa|Yaba monkey tumor virus (strain

Query: 1  PNLQVFLGK 9
          P L +++GK
Sbjct: 7  PQLVIYVGK 15


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 1    PNLQVFLG 8
            PN  +++G
Sbjct: 1527 PNFSIYIG 1534


>sp|GP_BUNYW|ENVELOPMENT polyprotein|Bunyamwera virus (BUNV)

Query: 5   VFLGKH 10
           VFL KH
Sbjct: 559 VFLNKH 564


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 1    PNLQVFLG 8
            PN  +++G
Sbjct: 1527 PNFSIYIG 1534


>sp|POL_SFV3L|PRO-POL polyprotein|Simian foamy virus type 3

Query: 1   PNLQVFL 7
           PN+QV++
Sbjct: 307 PNVQVYV 313




15|Sequence|71|80|FLGKHNLRQR

>sp|DR1_HHV6U|UNCHARACTERIZED protein DR1|Human herpesvirus 6A (strain Uganda-1102)

Query: 1  FLGKHNLRQ 9
           LG+H+LR 
Sbjct: 23 LLGRHSLRH 31


>sp|DR1_HHV6Z|UNCHARACTERIZED protein DR1|Human herpesvirus 6B (strain Z29)

Query: 1  FLGKHNLRQ 9
           LG+H+LR 
Sbjct: 23 LLGRHSLRH 31


>sp|GP_NYV|ENVELOPMENT polyprotein|New York virus (NYV)

Query: 1   FLGKHN 6
           FLGKH+
Sbjct: 252 FLGKHS 257


>sp|NSS_PTPV|NON-STRUCTURAL protein NS-S|Punta toro phlebovirus

Query: 5  HNLRQ 9
          HNLRQ
Sbjct: 50 HNLRQ 54


>sp|VP7_ROTGI|OUTER capsid glycoprotein VP7|Rotavirus B (isolate RVB/Rat/United

Query: 1   FLGKHNLRQR 10
           F GK N+  R
Sbjct: 236 FFGKRNIEPR 245


>sp|DNBI_VZVO|MAJOR DNA-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 5   HNLRQR 10
           H LRQR
Sbjct: 514 HRLRQR 519


>sp|DNBI_VZVD|MAJOR DNA-binding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 5   HNLRQR 10
           H LRQR
Sbjct: 514 HRLRQR 519


>sp|MATRX_VSIVS|MATRIX protein|Vesicular stomatitis Indiana virus (strain

Query: 1   FLGKHNLR 8
           FLG  NL+
Sbjct: 110 FLGSSNLK 117


>sp|MATRX_VSIVN|MATRIX protein|Vesicular stomatitis Indiana virus (strain

Query: 1   FLGKHNLR 8
           FLG  NL+
Sbjct: 110 FLGSSNLK 117


>sp|MATRX_VSIVG|MATRIX protein|Vesicular stomatitis Indiana virus (strain

Query: 1   FLGKHNLR 8
           FLG  NL+
Sbjct: 110 FLGSSNLK 117


>sp|MATRX_VSIVC|MATRIX protein|Vesicular stomatitis Indiana virus (strain

Query: 1   FLGKHNLR 8
           FLG  NL+
Sbjct: 110 FLGSSNLK 117


>sp|MATRX_VSIVA|MATRIX protein|Vesicular stomatitis Indiana virus (strain

Query: 1   FLGKHNLR 8
           FLG  NL+
Sbjct: 110 FLGSSNLK 117


>sp|GP_SINV|ENVELOPMENT polyprotein|Sin Nombre orthohantavirus (SNV) (Sin

Query: 1   FLGKHN 6
           F+GKH+
Sbjct: 252 FIGKHS 257


>sp|DPOL_HBVC1|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361


>sp|DPOL_HBVCJ|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361


>sp|DPOL_HBVC5|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361


>sp|DPOL_HBVC8|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 351 GEHNIR 356


>sp|DPOL_HBVC2|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361


>sp|DPOL_HBVC3|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361


>sp|DPOL_HBVC4|PROTEIN P|Hepatitis B virus genotype C

Query: 3   GKHNLR 8
           G+HN+R
Sbjct: 356 GEHNIR 361




16|Sequence|76|85|NLRQRESSQE

 ***** No hits found ******


17|Sequence|81|90|ESSQEQSSVV

>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 1    ESSQEQSS 8
            ESSQ+Q S
Sbjct: 1774 ESSQQQMS 1781




18|Sequence|86|95|QSSVVRAVIH

 ***** No hits found ******


19|Sequence|91|100|RAVIHPDYDA

>sp|SCAF_HHV6Z|CAPSID scaffolding protein|Human herpesvirus 6B (strain Z29)

Query: 2   AVIHPDYDA 10
           +V+H +YDA
Sbjct: 267 SVVHGNYDA 275


>sp|PG160_VARV|DNA packaging protein OPG160|Variola virus

Query: 3  VIHPDYDA 10
          V +PDYD 
Sbjct: 55 VYNPDYDG 62


>sp|PG160_VAR67|DNA packaging protein OPG160|Variola virus (isolate

Query: 3  VIHPDYDA 10
          V +PDYD 
Sbjct: 55 VYNPDYDG 62


>sp|PG160_VACCC|DNA packaging protein OPG160|Vaccinia virus (strain Copenhagen)

Query: 3  VIHPDYDA 10
          V +PDYD 
Sbjct: 55 VYNPDYDG 62


>sp|PG160_MONPV|DNA packaging protein OPG160|Monkeypox virus (MPXV)

Query: 3  VIHPDYDA 10
          V +PDYD 
Sbjct: 85 VYNPDYDG 92


>sp|VP40_EBOSU|MATRIX protein VP40|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 3   VIHPDYD 9
           VI PDYD
Sbjct: 306 VITPDYD 312


>sp|SCAF_HHV6U|CAPSID scaffolding protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   VIHPDYDA 10
           V+H +YDA
Sbjct: 268 VVHGNYDA 275


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 5    HPDYD 9
            HP+YD
Sbjct: 2786 HPEYD 2790


>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)

Query: 4    IHPDYDA 10
            +H D+DA
Sbjct: 1807 VHEDFDA 1813


>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 4    IHPDYDA 10
            +H D+DA
Sbjct: 1807 VHEDFDA 1813


>sp|L_MABVA|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Angola/2005)

Query: 4    IHPDYDA 10
            +H D+DA
Sbjct: 1807 VHEDFDA 1813


>sp|A18_YMTV5|TRANSCRIPT termination protein A18|Yaba monkey tumor virus (strain

Query: 4   IHPDYD 9
           IH DYD
Sbjct: 194 IHVDYD 199


>sp|L_JUNIN|RNA-DIRECTED RNA polymerase L|Junin mammarenavirus (JUNV) (Junn mammarenavirus)

Query: 1   RAVIHPDYDA 10
           + + HPD D+
Sbjct: 433 KLIKHPDMDS 442


>sp|RIR1_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus

Query: 5  HPDY 8
          HPDY
Sbjct: 71 HPDY 74


>sp|RIR1_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus (isolate

Query: 5  HPDY 8
          HPDY
Sbjct: 71 HPDY 74


>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 5  HPDY 8
          HPDY
Sbjct: 71 HPDY 74


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 5  HPDY 8
          HPDY
Sbjct: 71 HPDY 74


>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 5  HPDY 8
          HPDY
Sbjct: 71 HPDY 74


>sp|LF1_EBVG|UNCHARACTERIZED LF1 protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 4   IHPDYDA 10
           +HP++DA
Sbjct: 333 LHPEHDA 339


>sp|LF1_EBVB9|UNCHARACTERIZED LF1 protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 4   IHPDYDA 10
           +HP++DA
Sbjct: 333 LHPEHDA 339


>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    RAVIHPD 7
            RAV+ PD
Sbjct: 1695 RAVVAPD 1701


>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|LF1_EBVA8|UNCHARACTERIZED LF1 protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 4   IHPDYDA 10
           +HP++DA
Sbjct: 333 LHPEHDA 339


>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate Human/AUS/1998)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|L_RABVI|LARGE structural protein|Rabies virus (strain India) (RABV)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1835 LVNPDYKA 1842


>sp|UL298_HCMVM|PROTEIN UL29/28|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   VIHPDYDA 10
           ++HPD+ A
Sbjct: 181 LVHPDHRA 188


>sp|UL298_HCMVA|PROTEIN UL29/UL28|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   VIHPDYDA 10
           ++HPD+ A
Sbjct: 182 LVHPDHRA 189


>sp|L_SEOU8|RNA-DIRECTED RNA polymerase L|Seoul virus (strain 80-39)

Query: 5    HPDYD 9
            HP YD
Sbjct: 1365 HPTYD 1369


>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4313 VEHPDVDG 4320


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4351 VEHPDVDG 4358


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4371 VEHPDVDG 4378


>sp|VU7_HHV6Z|PROTEIN U7|Human herpesvirus 6B (strain Z29)

Query: 5   HPDYD 9
           +PDYD
Sbjct: 127 NPDYD 131


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4401 VEHPDVDG 4408


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4313 VEHPDVDG 4320


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4351 VEHPDVDG 4358


>sp|UL95_HHV7J|PROTEIN U67|Human herpesvirus 7 (strain JI)

Query: 2   AVIHPDYD 9
           A+I P YD
Sbjct: 320 AIIFPVYD 327


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   HPDY 8
           HPDY
Sbjct: 874 HPDY 877


>sp|U7_HHV6U|PROTEIN U7|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   HPDYD 9
           +PDYD
Sbjct: 450 NPDYD 454


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4371 VEHPDVDG 4378


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 3    VIHPDYDA 10
            V HPD D 
Sbjct: 4401 VEHPDVDG 4408


>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired bat-associated)

Query: 3    VIHPDYDA 10
            +++PDY A
Sbjct: 1836 LVNPDYRA 1843


>sp|POLS_EEVVE|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1200 VTHPQYHA 1207


>sp|UL29_HCMVA|UNCHARACTERIZED protein UL29|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   VIHPDYDA 10
           ++HPD+ A
Sbjct: 182 LVHPDHRA 189


>sp|POLS_EEVVT|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1200 VTHPQYHA 1207


>sp|POLS_EEVVP|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1201 VTHPQYHA 1208


>sp|POLS_EEEVF|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   HPDY 8
           HPDY
Sbjct: 874 HPDY 877


>sp|POLS_EEVVM|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1200 VTHPQYHA 1207


>sp|POLS_EEVV8|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1200 VTHPQYHA 1207


>sp|POLS_EEVV3|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3    VIHPDYDA 10
            V HP Y A
Sbjct: 1201 VTHPQYHA 1208


>sp|POLS_EEEV3|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   HPDY 8
           HPDY
Sbjct: 872 HPDY 875


>sp|HEMA_CVHN1|HEMAGGLUTININ-ESTERASE coronavirus HKU1 (isolate N1)

Query: 3   VIHPDYD 9
           V++PD D
Sbjct: 212 VVYPDLD 218


>sp|POLS_EEEV|STRUCTURAL polyprotein|Eastern equine encephalitis virus (EEEV)

Query: 5   HPDY 8
           HPDY
Sbjct: 871 HPDY 874


>sp|MCP_EBVG|MAJOR capsid protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   RAVIHPDYD 9
           R  +HP YD
Sbjct: 539 RLELHPLYD 547


>sp|MCP_EBVB9|MAJOR capsid protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   RAVIHPDYD 9
           R  +HP YD
Sbjct: 539 RLELHPLYD 547


>sp|MCP_EBVA8|MAJOR capsid protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   RAVIHPDYD 9
           R  +HP YD
Sbjct: 539 RLELHPLYD 547


>sp|PORTL_EBVB9|PORTAL protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1  RAVIHPDYD 9
          RA+ H  YD
Sbjct: 67 RAISHCTYD 75


>sp|PORTL_EBVA8|PORTAL protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1  RAVIHPDYD 9
          RA+ H  YD
Sbjct: 67 RAISHCTYD 75


>sp|PORTL_EBVG|PORTAL protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1  RAVIHPDYD 9
          RA+ H  YD
Sbjct: 67 RAISHCTYD 75




20|Sequence|96|105|PDYDAASHDQ

>sp|UL33_HHV6U|G-PROTEIN coupled receptor homolog U12|Human herpesvirus 6A (strain

Query: 2   DYDAASHDQ 10
           D DA+ HDQ
Sbjct: 325 DSDASEHDQ 333


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    DYDAASHDQ 10
            DYD A+H Q
Sbjct: 5929 DYDYATHGQ 5937


>sp|GH_HHV7J|ENVELOPE glycoprotein H|Human herpesvirus 7 (strain JI)

Query: 1   PDYDAASHD 9
           P Y+ +SHD
Sbjct: 586 PIYNISSHD 594


>sp|MC148_MCV1|CHEMOKINE-LIKE protein MC148|Molluscum contagiosum virus subtype 1

Query: 2  DYDAASHD 9
          DY A  HD
Sbjct: 51 DYQAIGHD 58


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 1    PDYDAASHD 9
            PD +A  HD
Sbjct: 1831 PDSNAPIHD 1839


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 1    PDYDAASHD 9
            PD +A  HD
Sbjct: 1831 PDSNAPIHD 1839


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 1    PDYDAASHD 9
            PD +A  HD
Sbjct: 1831 PDSNAPIHD 1839


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 1    PDYDAASHD 9
            PD +A  HD
Sbjct: 1831 PDSNAPIHD 1839


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 3   YDAASHDQ 10
           YDA+ H Q
Sbjct: 814 YDASVHGQ 821


>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)

Query: 3   YDAASHD 9
           YD  SHD
Sbjct: 768 YDGYSHD 774


>sp|U20_HHV6Z|GLYCOPROTEIN U20|Human herpesvirus 6B (strain Z29)

Query: 2   DYDAASHD 9
           +Y+A +HD
Sbjct: 381 NYEAENHD 388


>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)

Query: 3   YDAASHD 9
           YD  SHD
Sbjct: 768 YDGYSHD 774


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 2   DYDAASHDQ 10
           +YD+ ++DQ
Sbjct: 301 NYDSQAYDQ 309


>sp|POLS_EEEVF|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 2   DYDAASHDQ 10
           +YD+ ++DQ
Sbjct: 301 NYDSRAYDQ 309


>sp|POLS_EEEV3|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 2   DYDAASHDQ 10
           +YD+ ++DQ
Sbjct: 300 NYDSRAYDQ 308




21|Sequence|101|110|ASHDQDIMLL

>sp|MATRX_NIPAV|MATRIX protein|Nipah virus

Query: 1   ASHDQDIM 8
           ASH QD++
Sbjct: 100 ASHPQDLL 107


>sp|U150A_HCMVM|UNCHARACTERIZED protein UL150A|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   HDQDIM 8
           HD+DI+
Sbjct: 134 HDEDII 139


>sp|BRRF2_EBVG|TEGUMENT protein BRRF2|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   ASHDQDIM 8
           ASH QD++
Sbjct: 304 ASHVQDVI 311


>sp|CAPSD_TTVV6|CAPSID protein|Torque teno virus (isolate Human/China/CT23F/2001)

Query: 1   ASHDQDIM 8
           ++HD D+M
Sbjct: 144 SNHDLDLM 151


>sp|BRRF2_EBVA8|TEGUMENT protein BRRF2|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   ASHDQDIM 8
           ASH QD++
Sbjct: 304 ASHVQDVI 311


>sp|BRRF2_EBVB9|TEGUMENT protein BRRF2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   ASHDQDIM 8
           ASH QD++
Sbjct: 304 ASHVQDVI 311




22|Sequence|106|115|DIMLLRLARP

>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 1   DIMLLRLARP 10
           D+ LLR  RP
Sbjct: 535 DVFLLRSTRP 544


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D+MLL   RP
Sbjct: 535 DVMLLNNTRP 544


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1   DIMLLRLARP 10
           D++LL  +RP
Sbjct: 535 DVLLLNNSRP 544


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1   DIMLLRLARP 10
           D++LL  +RP
Sbjct: 535 DVLLLNNSRP 544


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1   DIMLLRLARP 10
           DI+LL   RP
Sbjct: 536 DILLLNNIRP 545


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D++LL   RP
Sbjct: 535 DVLLLNNTRP 544


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D++LL   RP
Sbjct: 535 DVLLLNNTRP 544


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D++LL   RP
Sbjct: 535 DVLLLNNTRP 544


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D++LL   RP
Sbjct: 535 DVLLLNNTRP 544


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1   DIMLLRLARP 10
           D++LL   RP
Sbjct: 535 DVLLLSNTRP 544




23|Sequence|111|120|RLARPAKLSE

>sp|VE6_HPV49|PROTEIN E6|Human papillomavirus type 49

Query: 2  LARPAKLSE 10
          +ARP K+ E
Sbjct: 1  MARPVKVCE 9


>sp|L_HMPVC|RNA-DIRECTED RNA polymerase L|Human metapneumovirus (strain CAN97-83) (HMPV)

Query: 2   LARPAKLSE 10
           +++P KLSE
Sbjct: 751 VSKPVKLSE 759




24|Sequence|116|125|AKLSELIQPL

>sp|VP4_CTFVL|UNCHARACTERIZED protein VP4|Colorado tick fever virus (strain

Query: 4   SELIQPL 10
           SELI PL
Sbjct: 898 SELISPL 904


>sp|VE7_HPV23|PROTEIN E7|Human papillomavirus 23

Query: 3  LSELIQPL 10
          L EL+QP+
Sbjct: 13 LEELVQPI 20


>sp|POL_FOAMV|PRO-POL polyprotein|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 3   LSELIQPL 10
            +EL+QPL
Sbjct: 407 FAELVQPL 414


>sp|VP6_CTFVL|UNCHARACTERIZED protein VP6|Colorado tick fever virus (strain

Query: 2   KLSELIQPL 10
           K+SE+ +PL
Sbjct: 258 KVSEIFKPL 266


>sp|VE7_HPV38|PROTEIN E7|Human papillomavirus 38

Query: 3  LSELIQPL 10
          L EL+QP+
Sbjct: 13 LEELVQPI 20


>sp|POL_SFV3L|PRO-POL polyprotein|Simian foamy virus type 3

Query: 2   KLSELIQPL 10
             SEL++PL
Sbjct: 406 NFSELVKPL 414


>sp|POL_SFV1|PRO-POL polyprotein|Simian foamy virus type 1

Query: 4   SELIQPL 10
           SEL++PL
Sbjct: 408 SELVKPL 414


>sp|VE7_HPV37|PROTEIN E7|Human papillomavirus 37

Query: 2  KLSELIQP 9
          +L EL+QP
Sbjct: 14 ELQELVQP 21




25|Sequence|121|130|LIQPLPLERD

>sp|POL_FOAMV|PRO-POL polyprotein|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 1  LIQPLPLE 8
          L+QPLP E
Sbjct: 6  LLQPLPAE 13


>sp|POLG_AIVA8|GENOME polyprotein|Aichi virus (strain Human/A846/88/1989) (AiV)

Query: 3    QPLPLERD 10
            QP PL+R+
Sbjct: 1999 QPAPLKRN 2006


>sp|MATRX_PI3H4|MATRIX protein|Human parainfluenza 3 virus (strain

Query: 2  IQPLPLE 8
          I+PLPL+
Sbjct: 22 IEPLPLK 28


>sp|POL_HV2NZ|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5    LPLERD 10
            LP+ERD
Sbjct: 999  LPVERD 1004


>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5    LPLERD 10
            LP+ERD
Sbjct: 1000 LPVERD 1005


>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5    LPLERD 10
            LP+ERD
Sbjct: 1001 LPVERD 1006


>sp|MATRX_PI1HC|MATRIX protein|Human parainfluenza 1 virus (strain

Query: 2  IQPLPLE 8
          ++PLPL+
Sbjct: 18 VEPLPLK 24


>sp|MATRX_PI1HA|MATRIX protein|Human parainfluenza 1 virus (strains

Query: 2  IQPLPLE 8
          ++PLPL+
Sbjct: 18 VEPLPLK 24


>sp|PORTL_HCMVM|PORTAL protein|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   QPLPLERD 10
           +PL  ERD
Sbjct: 273 EPLAYERD 280


>sp|PORTL_HCMVA|PORTAL protein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   QPLPLERD 10
           +PL  ERD
Sbjct: 273 EPLAYERD 280




26|Sequence|126|135|PLERDCSANT

>sp|RDRP_ROTWI|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate RVA/Human/United

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTHW|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTHT|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTHP|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTHK|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTAD|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLTAN 105


>sp|RDRP_ROTH3|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   PLERDCSAN 9
           PLE D +AN
Sbjct: 97  PLEADLNAN 105


>sp|ENV_HV1Z8|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   PLERDCSANT 10
           P++ D SANT
Sbjct: 186 PIDDDNSANT 195


>sp|TRM3_HHV6U|TRIPARTITE terminase subunit 3|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  ERDCS 7
          ERDCS
Sbjct: 22 ERDCS 26


>sp|ORF23_HHV8P|PROTEIN ORF23|Human herpesvirus 8 type P

Query: 1   PLERDCSAN 9
           P++++C+ N
Sbjct: 386 PIQKECTGN 394


>sp|RP132_VAR67|DNA-DIRECTED RNA polymerase 133 kDa|Variola virus (isolate Human/India/Ind3/1967)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_VACCA|DNA-DIRECTED RNA polymerase 133 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1048 MERDCLIAHGAANT 1061


>sp|RP132_VARV|DNA-DIRECTED RNA polymerase 133 kDa|Variola virus

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_VACCC|DNA-DIRECTED RNA polymerase 133 kDa|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_VACCT|DNA-DIRECTED RNA polymerase 133 kDa|Vaccinia virus (strain Tian Tan)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_MONPZ|DNA-DIRECTED RNA polymerase 132 kDa|Monkeypox virus (strain Zaire-96-I-16) (MPXV)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_MONPV|DNA-DIRECTED RNA polymerase|Monkeypox virus (MPXV)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_CWPXG|DNA-DIRECTED RNA polymerase 132 kDa|Cowpox virus (strain GRI-90 /

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|RP132_CWPXB|DNA-DIRECTED RNA polymerase 132 kDa|Cowpox virus (strain Brighton Red)

Query: 2    LERDC-----SANT 10
            +ERDC     +ANT
Sbjct: 1056 MERDCLIAHGAANT 1069


>sp|SHUT_ADE05|SHUTOFF protein|Human adenovirus C serotype 5

Query: 1   PLERDCS 7
           PLERD +
Sbjct: 291 PLERDAN 297


>sp|SHUT_ADE02|SHUTOFF protein|Human adenovirus C serotype 2

Query: 1   PLERDCS 7
           PLERD +
Sbjct: 291 PLERDAN 297




27|Sequence|131|140|CSANTTSCHI

>sp|PG036_MONPV|PROTEIN OPG036|Monkeypox virus (MPXV)

Query: 4  NTTSCHI 10
          N T CHI
Sbjct: 69 NNTQCHI 75


>sp|PG036_VARV|PROTEIN OPG036|Variola virus

Query: 4  NTTSCHI 10
          N T CHI
Sbjct: 69 NNTQCHI 75


>sp|PG036_VAR67|PROTEIN OPG036|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 4  NTTSCHI 10
          N T CHI
Sbjct: 69 NNTQCHI 75


>sp|PG036_VACCC|PROTEIN OPG036|Vaccinia virus (strain Copenhagen) (VACV)

Query: 4  NTTSCHI 10
          N T CHI
Sbjct: 69 NNTQCHI 75


>sp|L_JUNIN|RNA-DIRECTED RNA polymerase L|Junin mammarenavirus (JUNV) (Junn mammarenavirus)

Query: 1    CSANTTSCHI 10
            C AN  S HI
Sbjct: 1425 CIANGVSTHI 1434


>sp|UL32_HHV6Z|PACKAGING protein UL32 homolog|Human herpesvirus 6B (strain Z29)

Query: 1   CSANTTSCHI 10
           C ANT + HI
Sbjct: 154 CFANTVNDHI 163


>sp|UL32_HHV6U|PACKAGING protein UL32|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   CSANTTSCHI 10
           C ANT + HI
Sbjct: 154 CFANTVNDHI 163


>sp|U91_HHV6Z|PROTEIN U91|Human herpesvirus 6B (strain Z29)

Query: 1  CSANTTSCH 9
          C+ +TTS H
Sbjct: 66 CTESTTSVH 74


>sp|ENV_HV193|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   CSANTTS 7
           CS NTT+
Sbjct: 158 CSFNTTT 164


>sp|ENV_HV1OY|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   CSANTTS 7
           CS NTT+
Sbjct: 162 CSFNTTT 168




28|Sequence|136|145|TSCHILGWGK

>sp|VGP_TAFVC|ENVELOPE glycoprotein|Tai Forest ebolavirus (strain Cote

Query: 2   SCHILG 7
           +CHILG
Sbjct: 600 TCHILG 605


>sp|VGP_EBOZ5|ENVELOPE glycoprotein|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 2   SCHILG 7
           +CHILG
Sbjct: 600 TCHILG 605


>sp|VGP_EBOG4|ENVELOPE glycoprotein|Zaire ebolavirus (strain Gabon-94) (ZEBOV)

Query: 2   SCHILG 7
           +CHILG
Sbjct: 600 TCHILG 605


>sp|VGP_EBOZM|ENVELOPE glycoprotein|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 2   SCHILG 7
           +CHILG
Sbjct: 600 TCHILG 605


>sp|VGP_EBOEC|ENVELOPE glycoprotein|Zaire ebolavirus (strain Eckron-76) (ZEBOV)

Query: 2   SCHILG 7
           +CHILG
Sbjct: 600 TCHILG 605


>sp|RIR1_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus

Query: 1   TSCHILGW 8
           TS H  GW
Sbjct: 719 TSMHFYGW 726


>sp|RIR1_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus (isolate

Query: 1   TSCHILGW 8
           TS H  GW
Sbjct: 719 TSMHFYGW 726


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   TSCHILGW 8
           TS H  GW
Sbjct: 719 TSMHFYGW 726


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 1   TSCHILGW 8
           TS H  GW
Sbjct: 719 TSMHFYGW 726


>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 1   TSCHILGW 8
           TS H  GW
Sbjct: 719 TSMHFYGW 726


>sp|POL_HV1U4|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 788 HLLSWG 793


>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 4    HILGW 8
            H++GW
Sbjct: 5005 HLMGW 5009


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 4    HILGW 8
            H++GW
Sbjct: 4982 HLMGW 4986


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 4    HILGW 8
            H++GW
Sbjct: 4991 HLMGW 4995


>sp|POL_HV1S9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 792 HLLKWG 797


>sp|POL_HV1S2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 792 HLLKWG 797


>sp|POL_HV190|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLKWG 800


>sp|ETF2_MCV1|EARLY transcription factor 82 kDa|Molluscum contagiosum virus subtype 1

Query: 3  CHILG 7
          CH+LG
Sbjct: 70 CHLLG 74


>sp|POL_HV1SE|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 793 HLLKWG 798


>sp|POL_HV1ET|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 799 HLLKWG 804


>sp|UL29_HCMVA|UNCHARACTERIZED protein UL29|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2  SCHILGW 8
          SC  LGW
Sbjct: 72 SCVSLGW 78


>sp|POL_HV196|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 790 HLLKWG 795


>sp|KR2_EBVG|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   TSCHIL 6
           TSCH L
Sbjct: 143 TSCHAL 148


>sp|KR2_EBVB9|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   TSCHIL 6
           TSCH L
Sbjct: 143 TSCHAL 148


>sp|KR2_EBVA8|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   TSCHIL 6
           TSCH L
Sbjct: 143 TSCHAL 148


>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 790 HLLKWG 795


>sp|POL_HV1RH|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 796 HLLKWG 801


>sp|POL_HV1JR|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 799 HLLKWG 804


>sp|POL_HV1YF|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 805 HLLKWG 810


>sp|POL_HV1MA|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 800 HLLKWG 805


>sp|POL_HV19N|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLKWG 800


>sp|POL_HV193|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 790 HLLKWG 795


>sp|POL_HV1B9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLKWG 800


>sp|POL_HV192|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 791 HLLKWG 796


>sp|HEMA_I34A1|HEMAGGLUTININ A virus (strain A/Puerto

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|POL_HV1YB|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 805 HLLKWG 810


>sp|HEMA_I33A0|HEMAGGLUTININ A virus (strain A/Wilson-Smith/1933

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNITGW 77


>sp|HEMA_I54A2|HEMAGGLUTININ A virus (strain A/Malaysia:Malaya/302/1954

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|UL06_HCMVM|UNCHARACTERIZED protein UL6|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   SCHILGWGK 10
           SC++  WG+
Sbjct: 96  SCNVTQWGR 104


>sp|HEMA_I88A6|HEMAGGLUTININ A virus (strain A/Swine/Indiana/1726/1988

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I51A0|HEMAGGLUTININ A virus (strain A/USA:Albany/12/1951

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I61A1|HEMAGGLUTININ A virus (strain A/Swine/Wisconsin/1/1961

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 1    TSCHILGWGK 10
            T+C    WG+
Sbjct: 3428 TTCRFQCWGE 3437


>sp|HEMA_I40A0|HEMAGGLUTININ A virus (strain A/Hickox/1940

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I36A0|HEMAGGLUTININ A virus (strain A/Henry/1936

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I35A3|HEMAGGLUTININ A virus (strain A/USA:Phila/1935

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|POL_HV1V9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 796 HLLRWG 801


>sp|HEMA_I77AB|HEMAGGLUTININ A virus (strain A/USSR/90/1977

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I67A2|HEMAGGLUTININ A virus (strain A/Swine/Wisconsin/1/1967

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|HEMA_I45A0|HEMAGGLUTININ A virus (strain A/USA:Huston/AA/1945

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|POL_HV1VI|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 789 HLLRWG 794


>sp|UL298_HCMVM|PROTEIN UL29/28|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2  SCHILGW 8
          SC  LGW
Sbjct: 71 SCVSLGW 77


>sp|UL298_HCMVA|PROTEIN UL29/UL28|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2  SCHILGW 8
          SC  LGW
Sbjct: 72 SCVSLGW 78


>sp|UL06_HCMVA|UNCHARACTERIZED protein UL6|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   SCHILGWGK 10
           SC++  WG+
Sbjct: 100 SCNVTQWGR 108


>sp|PG036_VARV|PROTEIN OPG036|Variola virus

Query: 1  TSCHIL 6
          T CHI+
Sbjct: 71 TQCHII 76


>sp|PG036_VAR67|PROTEIN OPG036|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 1  TSCHIL 6
          T CHI+
Sbjct: 71 TQCHII 76


>sp|PG036_VACCC|PROTEIN OPG036|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  TSCHIL 6
          T CHI+
Sbjct: 71 TQCHII 76


>sp|PG036_MONPV|PROTEIN OPG036|Monkeypox virus (MPXV)

Query: 1  TSCHIL 6
          T CHI+
Sbjct: 71 TQCHII 76


>sp|HEMA_I43A0|HEMAGGLUTININ A virus (strain A/USA:Iowa/1943

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|POL_HV1MN|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 801 HLLRWG 806


>sp|POL_HV1EL|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLRWG 800


>sp|HEMA_I18A0|HEMAGGLUTININ A virus (strain A/Brevig

Query: 3  CHILGW 8
          C+I GW
Sbjct: 72 CNIAGW 77


>sp|POL_HV1M2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 794 HLLRWG 799


>sp|POL_HV1Y2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLRWG 800


>sp|POL_HV1OY|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 794 HLLRWG 799


>sp|POL_HV1ND|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 792 HLLRWG 797


>sp|POL_HV1H2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLRWG 800


>sp|POL_HV1BR|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 807 HLLRWG 812


>sp|POL_HV1B1|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 807 HLLRWG 812


>sp|POL_HV1A2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 797 HLLRWG 802


>sp|POL_HV197|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 790 HLLRWG 795


>sp|POL_HV1LW|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLRWG 800


>sp|REV_HV1Z3|PROTEIN Rev|Human immunodeficiency virus type 1

Query: 2  SCHILGWG 9
          SC +LG G
Sbjct: 76 SCAVLGSG 83


>sp|POL_HV1Z2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 796 HLLRWG 801


>sp|POL_HV1N5|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 795 HLLRWG 800


>sp|POL_HV1B5|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 4   HILGWG 9
           H+L WG
Sbjct: 807 HLLRWG 812


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 1    TSCHIL 6
            T CH+L
Sbjct: 4673 TMCHVL 4678


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 1    TSCHIL 6
            T CH+L
Sbjct: 4703 TMCHVL 4708


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 1    TSCHIL 6
            T CH+L
Sbjct: 4653 TMCHVL 4658


>sp|HEMA_I86A0|HEMAGGLUTININ A virus (strain A/Taiwan/1/1986

Query: 2  SCHILGW 8
          +C I GW
Sbjct: 71 NCSIAGW 77


>sp|REV_HV1ZH|PROTEIN Rev|Human immunodeficiency virus type 1

Query: 2  SCHILGWG 9
          SC +LG G
Sbjct: 80 SCDLLGSG 87


>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)

Query: 2    SCHILGW 8
            +C+ LGW
Sbjct: 2235 ACNELGW 2241


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2   SCHILGW 8
           SC   GW
Sbjct: 396 SCDFKGW 402


>sp|HEMA_I83A1|HEMAGGLUTININ A virus (strain A/Chile/1/1983

Query: 3  CHILGW 8
          C I GW
Sbjct: 72 CSIAGW 77


>sp|HEMA_I77AA|HEMAGGLUTININ A virus (strain A/Brazil/11/1978

Query: 3  CHILGW 8
          C I GW
Sbjct: 72 CSIAGW 77


>sp|HEMA_I54A0|HEMAGGLUTININ A virus (strain A/Leningrad/1/1954

Query: 3  CHILGW 8
          C I GW
Sbjct: 72 CSIAGW 77


>sp|HEMA_I03A0|HEMAGGLUTININ A virus (strain A/Hong

Query: 3  CHILGW 8
          C + GW
Sbjct: 71 CSVAGW 76


>sp|HEMA_I80AA|HEMAGGLUTININ A virus (strain A/India/6263/1980

Query: 3  CHILGW 8
          C I GW
Sbjct: 72 CSIAGW 77


>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)

Query: 2   SCHILGW 8
           SC   GW
Sbjct: 396 SCDFKGW 402


>sp|HEMA_I79A4|HEMAGGLUTININ A virus (strain A/Kiev/59/1979

Query: 3  CHILGW 8
          C I GW
Sbjct: 72 CSIAGW 77


>sp|HEMA_I85A4|HEMAGGLUTININ A virus (strain A/Swine/Netherlands/12/1985

Query: 3  CHILGW 8
          C++ GW
Sbjct: 72 CNVAGW 77


>sp|HEMA_I02A7|HEMAGGLUTININ A virus (strain A/Teal/China/2978.1/2002

Query: 3  CHILGW 8
          C + GW
Sbjct: 67 CSVAGW 72




29|Sequence|141|150|LGWGKTADGD

>sp|POLG_EC12T|GENOME polyprotein|Echovirus 12 (strain Travis)

Query: 3   WGKTADG 9
           W KT+DG
Sbjct: 140 WQKTSDG 146


>sp|L_SINV|RNA-DIRECTED RNA polymerase L|Sin Nombre orthohantavirus (SNV) (Sin

Query: 2    GWGKTAD 8
            GWG+T +
Sbjct: 2095 GWGETVN 2101


>sp|L_ANDV|RNA-DIRECTED RNA polymerase L|Andes orthohantavirus (ANDV) (Andes virus)

Query: 2    GWGKTAD 8
            GWG+T +
Sbjct: 2095 GWGETVN 2101


>sp|DNB2_ADE40|DNA-BINDING protein|Human adenovirus F serotype 40

Query: 3   WGKTADG 9
           WG+  DG
Sbjct: 432 WGENVDG 438


>sp|DNBI_VZVO|MAJOR DNA-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 4   GKTADGD 10
           G+T DGD
Sbjct: 751 GRTFDGD 757


>sp|DNBI_VZVD|MAJOR DNA-binding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 4   GKTADGD 10
           G+T DGD
Sbjct: 751 GRTFDGD 757


>sp|L_CHAV|RNA-DIRECTED RNA polymerase L|Chandipura virus (strain I653514) (CHPV)

Query: 2    GWGKT 6
            GWG+T
Sbjct: 1325 GWGET 1329


>sp|L_BCCV|RNA-DIRECTED RNA polymerase L|Black Creek Canal orthohantavirus (BCCV)

Query: 2    GWGKT 6
            GWG+T
Sbjct: 2095 GWGET 2099


>sp|POLG_HE71B|GENOME polyprotein|Human enterovirus 71 (strain USA/BrCr/1970)

Query: 1    LGWGKTA 7
            L WGKT 
Sbjct: 2073 LEWGKTG 2079


>sp|PB2_I30A0|POLYMERASE basic protein 2|Influenza A virus (strain A/Swine/Iowa/15/1930

Query: 3  WGKTADG 9
          W KT+D 
Sbjct: 78 WSKTSDA 84


>sp|GP_BCCV|ENVELOPMENT polyprotein|Black Creek Canal orthohantavirus (BCCV)

Query: 1  LGWGKTA 7
          L W KTA
Sbjct: 81 LKWAKTA 87


>sp|CVC1_HHV11|CAPSID vertex component 1|Human herpesvirus 1 (strain 17)

Query: 2   GWGKTADGD 10
           GW   A GD
Sbjct: 364 GWEALAGGD 372


>sp|DNB2_ADE12|DNA-BINDING protein|Human adenovirus A serotype 12

Query: 3   WGKTADG 9
           WG+  DG
Sbjct: 441 WGENFDG 447


>sp|PHOSP_ABLVB|PHOSPHOPROTEIN bat lyssavirus (isolate Bat/AUS/1996)

Query: 1   LGWGKTADGD 10
           L W  T D D
Sbjct: 184 LDWSATNDDD 193


>sp|DPOL_HHV6U|DNA polymerase catalytic subunit|Human herpesvirus 6A (strain

Query: 3   WGKTADGD 10
           +G+T DG+
Sbjct: 120 FGRTEDGE 127


>sp|TEG3_HHV11|TEGUMENT protein UL14|Human herpesvirus 1 (strain 17)

Query: 2   GWGKTADGD 10
           GW   AD D
Sbjct: 138 GWMSPADSD 146


>sp|CVC1_HHV2H|CAPSID vertex component 1|Human herpesvirus 2 (strain HG52)

Query: 2   GWGKTADGD 10
           GW   A GD
Sbjct: 361 GWEALAGGD 369




30|Sequence|146|155|TADGDFPDTI

>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 2   ADGDFPD 8
           A GDFPD
Sbjct: 878 APGDFPD 884


>sp|ENV_SFV1|ENVELOPE glycoprotein gp130|Simian foamy virus type 1

Query: 3   DGDFPD 8
           +GDFPD
Sbjct: 909 EGDFPD 914


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 1    TADGDFPD 8
            TA+GD PD
Sbjct: 2221 TANGDHPD 2228


>sp|NCAP_GTOVV|NUCLEOPROTEIN mammarenavirus (isolate Human/Venezuela/NH-95551/1990) (GTOV)

Query: 3   DGDFPDTI 10
           DG  PDTI
Sbjct: 534 DGHLPDTI 541


>sp|SCAF_VZVD|CAPSID scaffolding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3   DGDFPDTI 10
           DG+FP  I
Sbjct: 460 DGEFPSNI 467


>sp|DPOL_HHV7J|DNA polymerase catalytic subunit|Human herpesvirus 7 (strain JI)

Query: 1   TADGDFPD 8
           + +G+FPD
Sbjct: 286 SQNGNFPD 293


>sp|DPOL_HHV6Z|DNA polymerase catalytic subunit|Human herpesvirus 6B (strain Z29)

Query: 3   DGDFPD 8
           +G+FPD
Sbjct: 289 NGNFPD 294


>sp|DPOL_HHV6U|DNA polymerase catalytic subunit|Human herpesvirus 6A (strain

Query: 3   DGDFPD 8
           +G+FPD
Sbjct: 289 NGNFPD 294


>sp|POLG_AIVA8|GENOME polyprotein|Aichi virus (strain Human/A846/88/1989) (AiV)

Query: 3    DGDFPDTI 10
            DGDF D +
Sbjct: 2374 DGDFQDVV 2381


>sp|VE2_HPV39|REGULATORY protein E2|Human papillomavirus 39

Query: 1   TADGDFPDT 9
           T+DG  P T
Sbjct: 208 TSDGSVPTT 216


>sp|CEP2_HCMVA|CYTOPLASMIC envelopment protein 2|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   TADGDFPDTI 10
           T DG  PD I
Sbjct: 129 TCDGITPDVI 138


>sp|CAPSD_TTVG1|CAPSID protein|Torque teno midi virus 1

Query: 5   DFPDTI 10
           D PDTI
Sbjct: 531 DVPDTI 536


>sp|CEP2_HCMVM|CYTOPLASMIC envelopment protein 2|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   TADGDFPDTI 10
           T DG  PD I
Sbjct: 129 TCDGITPDVI 138


>sp|ENV_SFV3L|ENVELOPE glycoprotein gp130|Simian foamy virus type 3

Query: 3   DGDFP 7
           +GDFP
Sbjct: 902 EGDFP 906


>sp|HELI_EBVB9|DNA replication helicase|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 4   GDFPDTI 10
           GDF DT+
Sbjct: 480 GDFMDTL 486


>sp|VE8E2_HPV39|PROTEIN E8^E2C|Human papillomavirus 39

Query: 1  TADGDFPDT 9
          T+DG  P T
Sbjct: 13 TSDGSVPTT 21


>sp|SCP_EBVB9|SMALL capsomere-interacting protein|Epstein-Barr virus (strain B95-8)

Query: 3  DGDFPDT 9
          + DFPD+
Sbjct: 15 EADFPDS 21


>sp|VP3_ROTHC|PROTEIN VP3|Rotavirus C (isolate RVC/Human/United Kingdom/Bristol/1989)

Query: 3   DGDFPD 8
           DG+ PD
Sbjct: 393 DGEIPD 398


>sp|PB2_INCJJ|POLYMERASE basic protein 2|Influenza C virus (strain C/JJ/1950)

Query: 1   TADGDFPDTI 10
           T D D P  I
Sbjct: 577 TGDNDIPSLI 586


>sp|PB2_INCJH|POLYMERASE basic protein 2|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 1   TADGDFPDTI 10
           T D D P  I
Sbjct: 577 TGDNDIPSLI 586


>sp|PB2_INCBE|POLYMERASE basic protein 2|Influenza C virus (strain C/Berlin/1/1985)

Query: 1   TADGDFPDTI 10
           T D D P  I
Sbjct: 577 TGDNDIPSLI 586


>sp|PB2_INCAA|POLYMERASE basic protein 2|Influenza C virus (strain C/Ann

Query: 1   TADGDFPDTI 10
           T D D P  I
Sbjct: 577 TGDNDIPSLI 586


>sp|VE1_HPV41|REPLICATION protein E1|Human papillomavirus type 41

Query: 2   ADGDFPDTI 10
           +DG+ P TI
Sbjct: 595 SDGETPGTI 603


>sp|LTP_HHV8P|LARGE tegument protein deneddylase|Human herpesvirus 8 type P

Query: 2   ADGDFPD 8
           ADGDF +
Sbjct: 480 ADGDFTN 486




31|Sequence|151|160|FPDTIQCAYI

>sp|RIR1_HHV8P|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 8 type P

Query: 1   FPDTIQCAYI 10
           + DT+ C Y+
Sbjct: 111 YEDTLNCGYL 120


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 1    FPDTIQC 7
            +P TI C
Sbjct: 1658 YPSTISC 1664


>sp|VE2_HPV03|REGULATORY protein E2|Human papillomavirus 3

Query: 6   QCAYI 10
           QCAY+
Sbjct: 345 QCAYV 349


>sp|E3145_ADE07|EARLY E3 15.3 kDa protein|Human adenovirus B serotype 7

Query: 3   DTIQCAY 9
           D+I+C Y
Sbjct: 113 DSIECTY 119


>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)

Query: 1   FPDTIQC 7
           FP T+ C
Sbjct: 607 FPTTVTC 613


>sp|PRO_ADE03|PROTEASE adenovirus B serotype 3

Query: 2  PDTIQCAYI 10
          PD + CA +
Sbjct: 41 PDKLACAIV 49


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 1   FPDTIQC 7
           FP T+ C
Sbjct: 607 FPTTVTC 613


>sp|FUS_PIV5|FUSION glycoprotein F0|Parainfluenza virus 5 (strain W3)

Query: 2   PDTIQCAY 9
           P+T+ C Y
Sbjct: 328 PNTVYCRY 335




32|Sequence|156|165|QCAYIHLVSR

>sp|VE1_HPV73|REPLICATION protein E1|Human papillomavirus 73

Query: 2   CAYIHL 7
           C YIHL
Sbjct: 260 CMYIHL 265


>sp|VE1_HPV34|REPLICATION protein E1|Human papillomavirus type 34

Query: 2   CAYIHL 7
           C YIHL
Sbjct: 257 CLYIHL 262


>sp|VE1_HPV63|REPLICATION protein E1|Human papillomavirus type 63

Query: 1   QCAYIHL 7
           QC Y+H+
Sbjct: 226 QCNYMHV 232


>sp|VE1_HPV66|REPLICATION protein E1|Human papillomavirus 66

Query: 1   QCAYIHL 7
           QC Y H+
Sbjct: 239 QCVYYHM 245


>sp|HEPA_HHV8P|DNA helicase/primase complex-associated protein|Human herpesvirus 8

Query: 2   CAYIH 6
           CAY+H
Sbjct: 129 CAYLH 133


>sp|VE1_HPV03|REPLICATION protein E1|Human papillomavirus 3

Query: 1   QCAYIHL 7
           QC Y H+
Sbjct: 268 QCEYAHI 274


>sp|VL1_HPV26|MAJOR capsid protein L1|Human papillomavirus type 26

Query: 3   AYIHLVS 9
           AYIHL++
Sbjct: 390 AYIHLMN 396


>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 1    QCAYIHLVS 9
            +C Y H++S
Sbjct: 5352 KCCYDHVIS 5360


>sp|VE1_HPV35|REPLICATION protein E1|Human papillomavirus 35

Query: 2   CAYIHL 7
           C YIH+
Sbjct: 245 CLYIHI 250


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 1    QCAYIHLVS 9
            +C Y H++S
Sbjct: 5329 KCCYDHVIS 5337


>sp|SLFN_VACCC|SCHLAFEN-LIKE protein|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  QCAYIH 6
          +C Y+H
Sbjct: 25 ECCYVH 30


>sp|VE1_HPV30|REPLICATION protein E1|Human papillomavirus 30

Query: 1   QCAYIHL 7
           QC Y H+
Sbjct: 240 QCMYYHI 246


>sp|VE1_HPV28|REPLICATION protein E1|Human papillomavirus 28

Query: 1   QCAYIHL 7
           QC Y H+
Sbjct: 271 QCDYAHI 277


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    CAYIHLVS 9
            C Y H++S
Sbjct: 5641 CTYEHVIS 5648


Query: 1    QCAYIHL 7
            +CAY H+
Sbjct: 5023 KCAYDHV 5029


>sp|VE1_HPV16|REPLICATION protein E1|Human papillomavirus type 16

Query: 2   CAYIHLVS 9
           C Y+H+ S
Sbjct: 259 CLYLHIQS 266


>sp|CEP2_HHV11|CYTOPLASMIC envelopment protein 2|Human herpesvirus 1 (strain 17)

Query: 2   CAYIHLVS 9
           CA +HL S
Sbjct: 125 CAIVHLRS 132


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    CAYIHLVS 9
            C Y H++S
Sbjct: 5616 CTYEHVIS 5623


Query: 1    QCAYIHL 7
            +CAY H+
Sbjct: 4998 KCAYDHV 5004


>sp|VE1_HPV31|REPLICATION protein E1|Human papillomavirus 31

Query: 2   CAYIHLVS 9
           C Y HL S
Sbjct: 239 CLYCHLQS 246


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYTHII 891


>sp|CEP2_HHV2H|CYTOPLASMIC envelopment protein 2|Human herpesvirus 2 (strain HG52)

Query: 2   CAYIHLVS 9
           CA +HL S
Sbjct: 123 CATVHLRS 130


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 2   CAYIHLV 8
           C Y H++
Sbjct: 885 CGYAHII 891




33|Sequence|161|170|HLVSREECEH

>sp|PAP1_MCV1|POLY(A) polymerase catalytic subunit|Molluscum contagiosum virus subtype 1

Query: 2   LVSREEC 8
           LVSRE+C
Sbjct: 437 LVSREKC 443


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 3    VSREEC 8
            V+REEC
Sbjct: 1052 VTREEC 1057


>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)

Query: 3    VSREEC 8
            ++REEC
Sbjct: 1052 ITREEC 1057


>sp|MC014_MCV1|PROTEIN MC014|Molluscum contagiosum virus subtype 1

Query: 1   HLVSREEC 8
           HL+ RE+C
Sbjct: 95  HLLQREKC 102


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 1    HLVSREECE 9
            HL+  + CE
Sbjct: 1010 HLIEMKTCE 1018


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 1    HLVSREECE 9
            HL+  + CE
Sbjct: 1010 HLIEMKTCE 1018


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 1    HLVSREECE 9
            HL+  + CE
Sbjct: 1006 HLIEMKTCE 1014


>sp|RIR2_HHV2H|RIBONUCLEOSIDE-DIPHOSPHATE reductase small subunit|Human herpesvirus 2 (strain HG52)

Query: 2   LVSREECEH 10
           L+SR+E  H
Sbjct: 213 LISRDEAVH 221


>sp|RIR2_HHV23|RIBONUCLEOSIDE-DIPHOSPHATE reductase small subunit|Human herpesvirus 2 (strain 333)

Query: 2   LVSREECEH 10
           L+SR+E  H
Sbjct: 213 LISRDEAVH 221


>sp|RIR2_HHV11|RIBONUCLEOSIDE-DIPHOSPHATE reductase small subunit|Human herpesvirus 1 (strain 17)

Query: 2   LVSREECEH 10
           L+SR+E  H
Sbjct: 216 LISRDEAVH 224


>sp|TRM1_HHV1F|TRIPARTITE terminase subunit 1|Human herpesvirus 1 (strain F)

Query: 2   LVSREECE 9
           LVS E+C+
Sbjct: 409 LVSPEQCD 416


>sp|VE1_HPV41|REPLICATION protein E1|Human papillomavirus type 41

Query: 4   SREECEH 10
           SR+ C H
Sbjct: 168 SRQRCTH 174




34|Sequence|166|175|EECEHAYPGQ

>sp|NCAP_VSNJO|NUCLEOPROTEIN stomatitis New Jersey virus

Query: 1   EECEHAYPGQ 10
           E C+  YPGQ
Sbjct: 257 ELCQMMYPGQ 266


>sp|POLG_YEFVU|GENOME polyprotein|Yellow fever virus (isolate Uganda/A7094A4/1948)

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVT|GENOME polyprotein|Yellow fever virus (strain Trinidad/TRINID79A/1979)

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVN|GENOME polyprotein|Yellow fever virus (isolate Angola/14FA/1971)

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVI|GENOME polyprotein|Yellow fever virus (isolate Ivory

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVF|GENOME polyprotein|Yellow fever virus (strain French

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVC|GENOME polyprotein|Yellow fever virus (isolate Ivory

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFVA|GENOME polyprotein|Yellow fever virus (strain Ghana/Asibi/1927)

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_YEFV1|GENOME polyprotein|Yellow fever virus (strain 17D

Query: 1    EECEHAYPG 9
            EECEH   G
Sbjct: 1499 EECEHLEDG 1507


>sp|POLG_SAFV|GENOME polyprotein|Saffold virus (SafV) (Human TMEV-like

Query: 3 CEHAYP 8
         C+H YP
Sbjct: 3 CKHGYP 8


>sp|L_LYCVA|RNA-DIRECTED RNA polymerase L|Lymphocytic choriomeningitis virus (strain

Query: 2   ECEHAYPG 9
           +C+H  PG
Sbjct: 757 DCQHTTPG 764


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 1    EECEHAYPG 9
            +ECEH   G
Sbjct: 1185 DECEHCSSG 1193


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 1    EECEHAYPG 9
            +ECEH   G
Sbjct: 1185 DECEHCSSG 1193


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 1    EECEHAYPG 9
            +ECEH   G
Sbjct: 1185 DECEHCSSG 1193


>sp|POLG_ROCV|GENOME polyprotein|Rocio virus (ROCV)

Query: 2    ECEHAY 7
            +CEH Y
Sbjct: 2817 DCEHPY 2822


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CEHAYPG 9
            C+H Y G
Sbjct: 2011 CQHGYKG 2017


>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 2    ECEHAY 7
            +CEH Y
Sbjct: 2804 DCEHPY 2809


>sp|CAPSD_HBOC4|MINOR capsid protein VP1|Human bocavirus 4 (HBoV4) (Human

Query: 4   EHAYP 8
           EHAYP
Sbjct: 292 EHAYP 296


>sp|IL10H_HCMVM|VIRAL interleukin-10 homolog|Human cytomegalovirus (strain Merlin)

Query: 4   EHAYPG 9
           +H YPG
Sbjct: 101 DHVYPG 106


>sp|CAPSD_HBOC3|MINOR capsid protein VP1|Human bocavirus 3 (HBoV3) (Adelavirus

Query: 4   EHAYP 8
           EHAYP
Sbjct: 292 EHAYP 296


>sp|IL10H_HCMVA|VIRAL interleukin-10 homolog|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   EHAYPG 9
           +H YPG
Sbjct: 100 DHVYPG 105


>sp|CAPSD_HBOC1|MINOR capsid protein VP1|Primate bocaparvovirus 1 (strain Human

Query: 4   EHAYP 8
           EHAYP
Sbjct: 291 EHAYP 295


>sp|GQ2_HHV6Z|GLYCOPROTEIN Q2|Human herpesvirus 6B (strain Z29)

Query: 5  HAYPG 9
          HAYPG
Sbjct: 13 HAYPG 17


>sp|CAPSD_HBOC2|MINOR capsid protein VP1|Human bocavirus 2 (HBoV2) (Human

Query: 4   EHAYP 8
           EHAYP
Sbjct: 291 EHAYP 295


>sp|VGF_VARV|PRO-VARIOLA growth factor|Variola virus

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|VGF_VAR67|PRO-VARIOLA growth factor|Variola virus (isolate Human/India/Ind3/1967)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|VGF_MONPV|PRO-VIRAL epidermal growth factor|Monkeypox virus (MPXV)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|VGF_VACCT|PRO-VACCINIA growth factor|Vaccinia virus (strain Tian Tan)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|VGF_VACCA|PRO-VACCINIA growth factor|Vaccinia virus (strain Ankara) (VACV)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|GP_CCHFI|ENVELOPMENT polyprotein|Crimean-Congo hemorrhagic fever virus (strain

Query: 1    EECEHAYPG 9
            + C H  PG
Sbjct: 1308 QSCTHGVPG 1316


>sp|VGF_VACCP|PRO-VACCINIA growth factor|Vaccinia virus (strain L-IVP) (VACV)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|RIR1_HHV6Z|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human herpesvirus 6B (strain

Query: 3   CEHAY 7
           CEH Y
Sbjct: 542 CEHIY 546


>sp|RIR1_HHV6U|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human herpesvirus 6A (strain

Query: 3   CEHAY 7
           CEH Y
Sbjct: 542 CEHIY 546


>sp|VGF_VACCC|PRO-VACCINIA growth factor|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3  CEHAYPG 9
          C H Y G
Sbjct: 71 CSHGYTG 77


>sp|ORF24_HHV8P|PROTEIN ORF24|Human herpesvirus 8 type P

Query: 1   EECEHAY 7
           E+C HA+
Sbjct: 174 EQCFHAF 180


>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)

Query: 1    EECEHAYPG 9
            E CEH   G
Sbjct: 1483 EACEHLEDG 1491


>sp|POLG_WNV|GENOME polyprotein|West Nile virus (WNV)

Query: 1    EECEHAYPG 9
            + CEH  P 
Sbjct: 1076 DSCEHRGPA 1084


>sp|E434_ADE40|EARLY E4 34 kDa protein|Human adenovirus F serotype 40

Query: 2  ECEH 5
          ECEH
Sbjct: 41 ECEH 44


>sp|GM_HHV11|ENVELOPE glycoprotein M|Human herpesvirus 1 (strain 17)

Query: 3   CEHAY 7
           CEH Y
Sbjct: 300 CEHYY 304


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 1   EECEHAY 7
           E C H Y
Sbjct: 650 EYCNHCY 656


>sp|VP7_CTFVL|UNCHARACTERIZED protein VP7|Colorado tick fever virus (strain

Query: 2   ECEHAYPGQ 10
           ECE   P Q
Sbjct: 507 ECERVAPSQ 515




35|Sequence|171|180|AYPGQITQNM

>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 2   YPGQIT 7
           YPG+IT
Sbjct: 309 YPGKIT 314


>sp|HEMA_VAR67|PROTEIN OPG185|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 1   AYPGQITQNM 10
           A PG IT N+
Sbjct: 171 ATPGPITDNV 180


>sp|HEPA_VZVO|DNA helicase/primase complex-associated protein|Varicella-zoster

Query: 4  GQITQN 9
          GQ+TQN
Sbjct: 28 GQLTQN 33


>sp|HEPA_VZVD|DNA helicase/primase complex-associated protein|Varicella-zoster

Query: 4  GQITQN 9
          GQ+TQN
Sbjct: 28 GQLTQN 33


>sp|GAG_HTL1L|GAG polyprotein|Human T-cell leukemia virus 1

Query: 2  YPGQITQ 8
          YPGQ+ +
Sbjct: 76 YPGQVNE 82


>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 2   YPGQITQNM 10
           YPG  T+N+
Sbjct: 882 YPGIKTRNL 890


>sp|VU84_HHV6U|PROTEIN U84|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   YPGQITQNM 10
           YP +IT N+
Sbjct: 301 YPNEITLNI 309


>sp|POL_HTL1L|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1

Query: 1  AYPGQITQ 8
           YPGQ+ +
Sbjct: 75 GYPGQVNE 82




36|Sequence|176|185|ITQNMLCAGD

>sp|GP_BUNYW|ENVELOPMENT polyprotein|Bunyamwera virus (BUNV)

Query: 1   ITQNMLCAGD 10
           +T+N +C GD
Sbjct: 104 VTRNYVCTGD 113


>sp|TRM1_HHV6U|TRIPARTITE terminase subunit 1|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  QNMLCA 8
          QN+LCA
Sbjct: 60 QNLLCA 65


>sp|TRM1_HHV6Z|TRIPARTITE terminase subunit 1|Human herpesvirus 6B (strain Z29)

Query: 3  QNMLCA 8
          QN+LCA
Sbjct: 60 QNLLCA 65


>sp|E1B55_ADE40|E1B 55 kDa protein|Human adenovirus F serotype 40

Query: 1   ITQNMLCAG 9
           +  NM+C G
Sbjct: 327 VKHNMICGG 335


>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)

Query: 2    TQNMLCA 8
            TQ+M+C+
Sbjct: 3354 TQDMICS 3360


>sp|POLG_LIV|GENOME polyprotein|Louping ill virus (LIV)

Query: 2    TQNMLCA 8
            TQ+M+C+
Sbjct: 3354 TQDMICS 3360


>sp|L_ISFV|RNA-DIRECTED RNA polymerase L|Isfahan virus (ISFV)

Query: 3    QNMLCAGD 10
            +++LC GD
Sbjct: 1653 RDVLCGGD 1660


>sp|CAPSH_ADE08|HEXON protein|Human adenovirus D serotype 8

Query: 3   QNMLCAGD 10
           QN +C G+
Sbjct: 367 QNQICKGN 374


>sp|PP150_HCMVM|TEGUMENT protein pp150|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   ITQNMLCA 8
           + +NM CA
Sbjct: 174 VRRNMFCA 181


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    ITQNMLCAG 9
            +TQ + C G
Sbjct: 2679 LTQRLYCGG 2687


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    ITQNMLCAG 9
            +TQ + C G
Sbjct: 2679 LTQRLYCGG 2687


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 2    TQNMLCAGD 10
            T  ++C GD
Sbjct: 1435 TAEVICVGD 1443


>sp|PRIM_HHV2H|DNA primase|Human herpesvirus 2 (strain HG52)

Query: 2    TQNMLCA 8
            T N LCA
Sbjct: 1018 TNNRLCA 1024


>sp|GLYC_PIARV|PRE-GLYCOPROTEIN polyprotein GP complex|Pichinde mammarenavirus (PICV) (Pichind

Query: 1   ITQNMLCA 8
           IT+N LC+
Sbjct: 483 ITRNSLCS 490


>sp|VP4_ROTHQ|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   TQNMLCA 8
           T N LCA
Sbjct: 160 TSNKLCA 166


>sp|VP4_ROTH7|OUTER capsid protein VP4|Rotavirus A (isolate RVA/Human/United

Query: 2   TQNMLCA 8
           T N LCA
Sbjct: 159 TSNKLCA 165


>sp|VP4_ROT41|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   TQNMLCA 8
           T N LCA
Sbjct: 160 TSNKLCA 166




37|Sequence|181|190|LCAGDEKYGK

>sp|NCAP_VSIVS|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 1   LCAGDEKY 8
            C GD KY
Sbjct: 348 FCVGDNKY 355


>sp|NCAP_VSIVN|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 1   LCAGDEKY 8
            C GD KY
Sbjct: 348 FCVGDNKY 355


>sp|NCAP_VSIVA|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 1   LCAGDEKY 8
            C GD KY
Sbjct: 348 FCVGDNKY 355


>sp|NCAP_VSIVG|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 1   LCAGDEKY 8
            C GD KY
Sbjct: 348 FCVGDSKY 355


>sp|NCAP_VSIVC|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 1   LCAGDEKY 8
            C GD KY
Sbjct: 348 FCVGDNKY 355


>sp|LTP_HHV7J|LARGE tegument protein deneddylase|Human herpesvirus 7 (strain JI)

Query: 1    LCAGDEKY 8
            LC G EK+
Sbjct: 1709 LCMGKEKF 1716


>sp|P100_HHV6U|LARGE structural phosphoprotein|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   AGDEKY 8
           AGDE+Y
Sbjct: 666 AGDEQY 671


>sp|POLG_WNV9|GENOME polyprotein|West Nile virus (strain NY-99)

Query: 4    GDEKY 8
            GDEKY
Sbjct: 3408 GDEKY 3412


>sp|POLG_KUNJM|GENOME polyprotein|Kunjin virus (strain MRM61C)

Query: 4    GDEKY 8
            GDEKY
Sbjct: 3408 GDEKY 3412


>sp|POLG_ILHV|GENOME polyprotein|Ilheus virus (ILHV)

Query: 4    GDEKY 8
            GDEKY
Sbjct: 3398 GDEKY 3402


>sp|US30_HCMVM|UNCHARACTERIZED protein US30|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   GDEKYG 9
           GD KYG
Sbjct: 157 GDAKYG 162


>sp|US30_HCMVA|UNCHARACTERIZED protein HHRF5|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   GDEKYG 9
           GD KYG
Sbjct: 157 GDAKYG 162


>sp|ICP27_EBVG|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 5   DEKYGK 10
           DE YGK
Sbjct: 138 DESYGK 143


>sp|ICP27_EBVB9|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain B95-8)

Query: 5   DEKYGK 10
           DE YGK
Sbjct: 138 DESYGK 143


>sp|ICP27_EBVA8|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain AG876)

Query: 5   DEKYGK 10
           DE YGK
Sbjct: 138 DESYGK 143


>sp|DPOL_HHV2H|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain HG52)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 108 CGGDER 113


>sp|DPOL_HHV21|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain 186)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 108 CGGDER 113


>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 107 CGGDER 112


>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 107 CGGDER 112


>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain Angelotti)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 107 CGGDER 112


>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)

Query: 2   CAGDEK 7
           C GDE+
Sbjct: 107 CGGDER 112


>sp|VP1_POVJC|MAJOR capsid protein VP1|JC polyomavirus (JCPyV) (JCV)

Query: 1   LCAGDEKY 8
           LC GD  Y
Sbjct: 246 LCKGDNLY 253


>sp|POLG_HAVNO|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVMB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVLA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVJ8|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVHM|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVHA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVH2|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVGB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAVGA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 127 ICAMVPGDQSYG 138


>sp|POLG_HAVCF|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|POLG_HAV88|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   LCA---GDEKYG 9
           +CA   GD+ YG
Sbjct: 148 ICAMVPGDQSYG 159


>sp|KITH_YMTV5|THYMIDINE kinase|Yaba monkey tumor virus (strain

Query: 5  DEKYGK 10
          DE+YG+
Sbjct: 45 DERYGR 50


>sp|PB2_I79A4|POLYMERASE basic protein 2|Influenza A virus (strain A/Kiev/59/1979

Query: 1   LCAGDEKYG 9
           L  GD +YG
Sbjct: 697 LGKGDRRYG 705


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 3    AGDEKY 8
            +GDE+Y
Sbjct: 1255 SGDERY 1260


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 1    LCAGDEKYGK 10
            LCA + ++G+
Sbjct: 1444 LCALERRFGQ 1453


>sp|ETF2_VACCT|EARLY transcription factor 82 kDa|Vaccinia virus (strain Tian Tan)

Query: 2   CAGDE 6
           CAGD+
Sbjct: 524 CAGDD 528


>sp|ETF2_VACCC|EARLY transcription factor 82 kDa|Vaccinia virus (strain Copenhagen)

Query: 2   CAGDE 6
           CAGD+
Sbjct: 524 CAGDD 528


>sp|ETF2_VACCA|EARLY transcription factor 82 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 2   CAGDE 6
           CAGD+
Sbjct: 524 CAGDD 528


>sp|ETF2_MONPV|EARLY transcription factor 82 kDa|Monkeypox virus (MPXV)

Query: 2   CAGDE 6
           CAGD+
Sbjct: 524 CAGDD 528


>sp|U23_HHV6Z|PROTEIN U23|Human herpesvirus 6B (strain Z29)

Query: 4   GDEKYGK 10
           GDE+Y K
Sbjct: 235 GDEEYFK 241


>sp|U23_HHV6U|GLYCOPROTEIN U23|Human herpesvirus 6A (strain Uganda-1102)

Query: 4   GDEKYGK 10
           GDE+Y K
Sbjct: 172 GDEEYFK 178




38|Sequence|186|195|EKYGKDSCQG

>sp|DNBI_VZVO|MAJOR DNA-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 1   EKYGKDSCQG 10
           E++G   CQG
Sbjct: 118 ERFGFSRCQG 127


>sp|DNBI_VZVD|MAJOR DNA-binding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 1   EKYGKDSCQG 10
           E++G   CQG
Sbjct: 118 ERFGFSRCQG 127


>sp|REV_HV2D2|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 3   YGKDSCQ 9
           YG++SC+
Sbjct: 120 YGRNSCE 126


>sp|ENV_HV2D2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 585 EKYLKDQAQ 593


>sp|ENV_HV2ST|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 577 EKYLKDQAQ 585


>sp|ENV_HV2EH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 581 EKYLKDQAQ 589


>sp|HN_PI3HA|HEMAGGLUTININ-NEURAMINIDASE parainfluenza 3 virus (strain

Query: 3  YGKDSC 8
          +GKD+C
Sbjct: 9  HGKDAC 14


>sp|ENV_HV2CA|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 584 EKYLKDQAQ 592


>sp|ENV_HV2NZ|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 574 EKYLKDQAQ 582


>sp|ENV_HV2S2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 577 EKYLKDQAQ 585


>sp|ENV_HV2D1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 573 EKYLKDQAQ 581


>sp|ENV_HV2G1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   EKYGKDSCQ 9
           EKY KD  Q
Sbjct: 574 EKYLKDQAQ 582


>sp|VE1_HPV03|REPLICATION protein E1|Human papillomavirus 3

Query: 2   KYGKDSC 8
           KY KD+C
Sbjct: 410 KYVKDAC 416


>sp|REV_HV2EH|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 4   GKDSCQ 9
           G+DSC+
Sbjct: 118 GRDSCE 123


>sp|VE1_HPV29|REPLICATION protein E1|Human papillomavirus 29

Query: 2   KYGKDSC 8
           KY KD+C
Sbjct: 411 KYVKDAC 417


>sp|VU5_HHV7J|PROTEIN U5|Human herpesvirus 7 (strain JI)

Query: 3   YGKDSCQG 10
           YG+  C G
Sbjct: 123 YGETKCSG 130


>sp|VE1_HPV28|REPLICATION protein E1|Human papillomavirus 28

Query: 2   KYGKDSC 8
           KY KD+C
Sbjct: 413 KYVKDAC 419


>sp|VE1_HPV10|REPLICATION protein E1|Human papillomavirus type 10

Query: 2   KYGKDSC 8
           KY KD+C
Sbjct: 432 KYLKDAC 438




39|Sequence|191|200|DSCQGDSGGP

>sp|VL1_HPV67|MAJOR capsid protein L1|Human papillomavirus 67

Query: 3   CQGDSGGP 10
           C G+S GP
Sbjct: 205 CSGNSNGP 212


>sp|PG095_VARV|ENTRY-FUSION complex associated protein OPG095|Variola virus

Query: 1   DSCQGDSGGP 10
           D C G  G P
Sbjct: 134 DECYGAPGSP 143


>sp|PG095_VAR67|ENTRY-FUSION complex associated protein OPG095|Variola virus (isolate

Query: 1   DSCQGDSGGP 10
           D C G  G P
Sbjct: 134 DECYGAPGSP 143


>sp|PG095_VACCC|ENTRY-FUSION complex associated protein OPG095|Vaccinia virus (strain

Query: 1   DSCQGDSGGP 10
           D C G  G P
Sbjct: 134 DECYGAPGSP 143


>sp|PG095_VACCA|ENTRY-FUSION complex associated protein OPG095|Vaccinia virus (strain Ankara)

Query: 1   DSCQGDSGGP 10
           D C G  G P
Sbjct: 134 DECYGAPGSP 143


>sp|PG095_MONPV|ENTRY-FUSION complex associated protein OPG095|Monkeypox virus (MPXV)

Query: 1   DSCQGDSGGP 10
           D C G  G P
Sbjct: 134 DECYGAPGSP 143


>sp|PG094_MONPV|ENTRY-FUSION complex protein OPG094|Monkeypox virus (MPXV)

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|PG094_VARV|ENTRY-FUSION complex protein OPG094|Variola virus

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|PG094_VAR67|ENTRY-FUSION complex protein OPG094|Variola virus (isolate

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|PG094_VACCA|ENTRY-FUSION complex protein OPG094|Vaccinia virus (strain Ankara) (VACV)

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|PG094_VACCT|ENTRY-FUSION complex protein OPG094|Vaccinia virus (strain Tian Tan)

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|PG094_VACCC|ENTRY-FUSION complex protein OPG094|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   DSCQGDS 7
           D CQGD+
Sbjct: 133 DWCQGDT 139


>sp|GP_BHAV|ENVELOPMENT polyprotein|Bhanja virus (BHAV)

Query: 1   DSCQGD 6
           D+CQGD
Sbjct: 287 DNCQGD 292


>sp|GP_RVFVZ|ENVELOPMENT polyprotein|Rift valley fever virus (strain

Query: 1  DSCQGDSGGP 10
          ++C GDS  P
Sbjct: 28 ETCFGDSTNP 37


>sp|PG055_VARV|PROTEIN OPG055|Variola virus

Query: 3   CQGDS 7
           CQGD+
Sbjct: 171 CQGDT 175


>sp|PG055_VAR67|PROTEIN OPG055|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 3   CQGDS 7
           CQGD+
Sbjct: 171 CQGDT 175


>sp|PG055_VACCP|PROTEIN OPG055|Vaccinia virus (strain L-IVP) (VACV)

Query: 3   CQGDS 7
           CQGD+
Sbjct: 168 CQGDT 172


>sp|PG055_VACCC|PROTEIN OPG055|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3   CQGDS 7
           CQGD+
Sbjct: 171 CQGDT 175


>sp|PG055_MONPV|PROTEIN OPG055|Monkeypox virus (MPXV)

Query: 3   CQGDS 7
           CQGD+
Sbjct: 171 CQGDT 175


>sp|GP_RVFV|ENVELOPMENT polyprotein|Rift valley fever virus (RVFV)

Query: 1  DSCQGDSGGP 10
          ++C GDS  P
Sbjct: 28 ETCFGDSTNP 37


>sp|POLG_HPE1H|GENOME polyprotein|Human parechovirus 1 (strain Harris)

Query: 2    SCQGDSGG 9
            SC+G  GG
Sbjct: 1665 SCKGMCGG 1672


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 2    SCQGDSGG 9
            SC+G  GG
Sbjct: 1664 SCKGMCGG 1671


>sp|POLG_HPEV5|GENOME polyprotein|Human parechovirus 5 (strain CT86-6760)

Query: 2    SCQGDSGG 9
            SC+G  GG
Sbjct: 1673 SCKGMCGG 1680


>sp|HEPA_EBVB9|DNA helicase/primase complex-associated protein|Epstein-Barr virus

Query: 2   SCQGDSG 8
           SC GD G
Sbjct: 139 SCSGDDG 145


>sp|VME1_CVH22|MEMBRANE protein|Human coronavirus 229E (HCoV-229E)

Query: 1 DSCQGD 6
         D+C GD
Sbjct: 4 DNCTGD 9


>sp|POLS_EEVVT|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 223 KGDSGRP 229


>sp|POLS_EEVVP|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 223 KGDSGRP 229


>sp|POLS_EEVV8|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 223 KGDSGRP 229


>sp|POLS_EEVV3|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 223 KGDSGRP 229


>sp|ORF24_TTVV3|ORF2/4 protein|Torque teno virus (isolate Human/Finland/Hel32/2002)

Query: 5   GDSGGP 10
           GD+GGP
Sbjct: 163 GDTGGP 168


>sp|VP16_HHV11|TEGUMENT protein VP16|Human herpesvirus 1 (strain 17)

Query: 5   GDSGGP 10
           GDS GP
Sbjct: 450 GDSPGP 455


>sp|POLS_EEVVE|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 222 RGDSGRP 228


>sp|VP16_HHV1F|TEGUMENT protein VP16|Human herpesvirus 1 (strain F)

Query: 5   GDSGGP 10
           GDS GP
Sbjct: 450 GDSPGP 455


>sp|POLG_CXB5P|GENOME polyprotein|Coxsackievirus B5 (strain Peterborough /

Query: 1    DSCQGDSGG 9
            D CQ   GG
Sbjct: 1277 DLCQNPDGG 1285


>sp|POLS_EEVVM|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 222 KGDSGRP 228


>sp|POLS_EEEV3|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 208 KGDSGRP 214


>sp|POLS_EEEVF|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 209 KGDSGRP 215


>sp|POLS_EEEV8|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 209 KGDSGRP 215


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 209 KGDSGRP 215


>sp|POLS_EEEV|STRUCTURAL polyprotein|Eastern equine encephalitis virus (EEEV)

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 207 KGDSGRP 213


>sp|POLS_WEEV|STRUCTURAL polyprotein|Western equine encephalitis virus (WEEV)

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 207 KGDSGRP 213


>sp|CAPSD_HASV7|CAPSID polyprotein VP90|Human astrovirus-7 (HAstV-7)

Query: 2   SCQGDSGGP 10
           S +GD+G P
Sbjct: 279 SFEGDNGTP 287


>sp|POLS_SINDV|STRUCTURAL polyprotein|Sindbis virus (SINV)

Query: 4   QGDSGGP 10
           +GDSG P
Sbjct: 212 RGDSGRP 218




40|Sequence|196|205|DSGGPLVCGD

>sp|POL_XMRV6|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|POL_XMRV3|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|POL_XMRV4|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1169 SGGPLLC 1175


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1165 SGGPLLC 1171


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 2    SGGPLVC 8
            SGGPL+C
Sbjct: 1163 SGGPLMC 1169


>sp|GAG_XMRV6|GAG polyprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|GAG_XMRV4|GAG polyprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|GAG_XMRV3|GAG polyprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 1   DSGGPLV 7
           DSGGPL+
Sbjct: 148 DSGGPLI 154


>sp|POLG_HCVED|GENOME polyprotein|Hepatitis C virus genotype 4a

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1169 SSGGPLMC 1176


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1    DSGGPLVC 8
             SGGPL+C
Sbjct: 1164 SSGGPLLC 1171


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 2    SGGPLVC 8
            SGGP++C
Sbjct: 1169 SGGPVLC 1175


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 2    SGGPLVC 8
            SGGP++C
Sbjct: 1169 SGGPVLC 1175


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 3   GGPLVCG 9
           GGP  CG
Sbjct: 621 GGPFDCG 627


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 2    SGGPLVC 8
            SGGP++C
Sbjct: 1169 SGGPVLC 1175


>sp|POLG_HE701|GENOME polyprotein|Human enterovirus 70 (strain J670/71)

Query: 1   DSGGPLVC 8
           D GG LVC
Sbjct: 973 DCGGLLVC 980


Query: 5    PLVCG 9
            PL+CG
Sbjct: 1397 PLICG 1401


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1165 SSGGPMLC 1172


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1166 SSGGPMLC 1173


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1407 PLVCG 1411


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1407 PLVCG 1411


>sp|POLG_POL2W|GENOME polyprotein|Poliovirus type 2 (strain W-2)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1408 PLVCG 1412


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1408 PLVCG 1412


>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1410 PLVCG 1414


>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1410 PLVCG 1414


>sp|POLG_EC30B|GENOME polyprotein|Echovirus 30 (strain Bastianni)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1392 PLVCG 1396


>sp|POLG_EC12T|GENOME polyprotein|Echovirus 12 (strain Travis)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1391 PLVCG 1395


Query: 3   GGPLVCG 9
           G P  CG
Sbjct: 533 GAPATCG 539


>sp|POLG_EC06C|GENOME polyprotein|Echovirus 6 (strain Charles)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1389 PLVCG 1393


>sp|POLG_EC01F|GENOME polyprotein|Echovirus 1 (strain Human/Egypt/Farouk/1951) (E-1)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1382 PLVCG 1386


>sp|POLG_CXB6S|GENOME polyprotein|Coxsackievirus B6 (strain Schmitt)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1382 PLVCG 1386


>sp|POLG_CXB4J|GENOME polyprotein|Coxsackievirus B4 (strain JVB /

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1381 PLVCG 1385


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1381 PLVCG 1385


>sp|POLG_CXB2O|GENOME polyprotein|Coxsackievirus B2 (strain Ohio-1)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1385 PLVCG 1389


>sp|POLG_CXA9|GENOME polyprotein|Coxsackievirus A9 (strain Griggs)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1399 PLVCG 1403


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1415 PLVCG 1419


>sp|POLG_CXA21|GENOME polyprotein|Coxsackievirus A21 (strain Coe)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1407 PLVCG 1411


>sp|POLG_EC05N|GENOME polyprotein|Echovirus 5 (strain Noyce)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|POLG_CXB1J|GENOME polyprotein|Coxsackievirus B1 (strain Japan)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1380 PLVCG 1384


>sp|POLG_EC09H|GENOME polyprotein|Echovirus 9 (strain Hill)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1391 PLVCG 1395


>sp|POLG_EC11G|GENOME polyprotein|Echovirus 11 (strain Gregory)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1393 PLVCG 1397


>sp|POLG_EC09B|GENOME polyprotein|Echovirus 9 (strain Barty)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1401 PLVCG 1405


>sp|POLG_CX16T|GENOME polyprotein|Coxsackievirus A16 (strain Tainan/5079/98)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|POLG_CXB3W|GENOME polyprotein|Coxsackievirus B3 (strain Woodruff)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1383 PLVCG 1387


>sp|POLG_CXB5P|GENOME polyprotein|Coxsackievirus B5 (strain Peterborough /

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1383 PLVCG 1387


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|POLG_CXB3N|GENOME polyprotein|Coxsackievirus B3 (strain Nancy)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1383 PLVCG 1387


>sp|POLG_HCVJK|GENOME polyprotein|Hepatitis C virus genotype 3k

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1169 SSGGPIMC 1176


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1168 SSGGPIMC 1175


>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1383 PLVCG 1387


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1165 SSGGPIMC 1172


>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1382 PLVCG 1386


>sp|POLG_HE71B|GENOME polyprotein|Human enterovirus 71 (strain USA/BrCr/1970)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 5    PLVCG 9
            PLVCG
Sbjct: 1394 PLVCG 1398


>sp|M2_I77AC|MATRIX protein 2|Influenza A virus (strain A/Swine/Tennessee/24/1977

Query: 1  DSGGPLV 7
          DSG PLV
Sbjct: 21 DSGDPLV 27


>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 955 DCGGKLLC 962


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 962 DCGGKLLC 969


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 962 DCGGKLLC 969


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    DSGGPLVCG 9
             SGGP++C 
Sbjct: 1168 SSGGPVLCS 1176


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 958 DCGGKLLC 965


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1168 SSGGPVLC 1175


>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1172 SSGGPVMC 1179


>sp|POLG_HCVNZ|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1170 SSGGPVMC 1177


>sp|POLG_HCVK3|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1170 SSGGPVMC 1177


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1168 SSGGPVLC 1175


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1169 SSGGPVMC 1176


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    DSGGPLVC 8
             SGGP++C
Sbjct: 1165 SSGGPVMC 1172


>sp|VE2_HPV28|REGULATORY protein E2|Human papillomavirus 28

Query: 2   SGGPLVCGD 10
           + GPL  GD
Sbjct: 211 AAGPLCTGD 219


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 971 DCGGKLLC 978


>sp|PORTL_VZVD|PORTAL protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 5   PLVCGD 10
           P+VCG+
Sbjct: 300 PVVCGE 305


>sp|POLG_HRV15|GENOME polyprotein|Human rhinovirus C (strain C15)

Query: 1   DSGGPLVC 8
           D GG L+C
Sbjct: 950 DCGGKLLC 957


Query: 5    PLVCG 9
            PL+CG
Sbjct: 1367 PLLCG 1371


>sp|VE8E2_HPV28|PROTEIN E8^E2C|Human papillomavirus 28

Query: 2  SGGPLVCGD 10
          + GPL  GD
Sbjct: 11 AAGPLCTGD 19


>sp|TRM1_HHV7J|TRIPARTITE terminase subunit 1|Human herpesvirus 7 (strain JI)

Query: 1   DSGGPLV 7
           DSG PL+
Sbjct: 653 DSGSPLL 659


>sp|GK_VZVO|ENVELOPE glycoprotein K|Varicella-zoster virus (strain Oka vaccine)

Query: 2  SGGPLVCG 9
          +GGP+V G
Sbjct: 45 NGGPVVWG 52


>sp|GK_VZVD|ENVELOPE glycoprotein K|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2  SGGPLVCG 9
          +GGP+V G
Sbjct: 45 NGGPVVWG 52


>sp|UNG_VZVD|URACIL-DNA glycosylase|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2  SGGPLVCGD 10
          SG P VC +
Sbjct: 4  SGEPTVCSN 12


>sp|UNG_VZVO|URACIL-DNA glycosylase|Varicella-zoster virus (strain Oka vaccine)

Query: 2  SGGPLVCGD 10
          SG P VC +
Sbjct: 4  SGEPTVCSN 12


>sp|LTP_HHV11|LARGE tegument protein deneddylase|Human herpesvirus 1 (strain 17)

Query: 1    DSGGP 5
            DSGGP
Sbjct: 2586 DSGGP 2590


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 2   SGGPLVCG 9
           S GP  CG
Sbjct: 324 SQGPTSCG 331


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 3    GGPLVCGD 10
            G PL  GD
Sbjct: 2435 GKPLAAGD 2442


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 3    GGPLVCGD 10
            G PL  GD
Sbjct: 2435 GKPLAAGD 2442


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 3    GGPLVCGD 10
            G PL  GD
Sbjct: 2436 GKPLAAGD 2443


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 3    GGPLVCGD 10
            G PL  GD
Sbjct: 2396 GKPLAAGD 2403


>sp|POLN_CHIK3|POLYPROTEIN P1234|Chikungunya virus (strain 37997) (CHIKV)

Query: 3    GGPLVCGD 10
            G PL  GD
Sbjct: 2396 GKPLAAGD 2403


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 3    GGPLVCGD 10
            GG +VC D
Sbjct: 2307 GGFIVCDD 2314


>sp|R1A_SARS|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus

Query: 4   GPLVCG 9
           GP  CG
Sbjct: 353 GPTTCG 358


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 4   GPLVCG 9
           GP  CG
Sbjct: 353 GPTTCG 358


>sp|GP_HTRV|ENVELOPMENT polyprotein|Heartland virus (HTRV)

Query: 3  GGPLVCG 9
          G P+VCG
Sbjct: 23 GDPIVCG 29


>sp|POLG_YEFV1|GENOME polyprotein|Yellow fever virus (strain 17D

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|MCP_HHV7J|MAJOR capsid protein|Human herpesvirus 7 (strain JI)

Query: 5   PLVCG 9
           P++CG
Sbjct: 923 PIICG 927


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 3   GGPLVCG 9
           G P+ CG
Sbjct: 819 GDPMQCG 825


>sp|POLG_YEFVF|GENOME polyprotein|Yellow fever virus (strain French

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|POLG_YEFVA|GENOME polyprotein|Yellow fever virus (strain Ghana/Asibi/1927)

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|POLG_YEFVI|GENOME polyprotein|Yellow fever virus (isolate Ivory

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|POLG_YEFVT|GENOME polyprotein|Yellow fever virus (strain Trinidad/TRINID79A/1979)

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|POLG_YEFVC|GENOME polyprotein|Yellow fever virus (isolate Ivory

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2364 PLLCG 2368


>sp|POLG_YEFVU|GENOME polyprotein|Yellow fever virus (isolate Uganda/A7094A4/1948)

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2365 PLLCG 2369


>sp|POLG_YEFVN|GENOME polyprotein|Yellow fever virus (isolate Angola/14FA/1971)

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2365 PLLCG 2369


>sp|POLG_YEFVE|GENOME polyprotein|Yellow fever virus (isolate Ethiopia/Couma/1961)

Query: 5    PLVCG 9
            PL+CG
Sbjct: 2365 PLLCG 2369


>sp|LRP1_HHV1F|LATENCY-RELATED protein 1|Human herpesvirus 1 (strain F)

Query: 5   PLVCG 9
           PLVCG
Sbjct: 111 PLVCG 115


>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 5  PLVCG 9
          PL+CG
Sbjct: 52 PLLCG 56


>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 5  PLVCG 9
          PL+CG
Sbjct: 52 PLLCG 56


>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 5  PLVCG 9
          PL+CG
Sbjct: 52 PLLCG 56




41|Sequence|201|210|LVCGDHLRGL

>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 3    CGDHLRGL 10
            CGD LRGL
Sbjct: 998  CGDILRGL 1005


Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2742 LVCGDDL 2748


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1555 VCQDHL 1560


>sp|POLG_HCVED|GENOME polyprotein|Hepatitis C virus genotype 4a

Query: 3    CGDHLRGL 10
            CGD +RGL
Sbjct: 993  CGDIIRGL 1000


Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2731 LVCGDDL 2737


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|VSSGP_EBOSU|SUPER small secreted glycoprotein|Sudan ebolavirus (strain

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VSGP_EBOSU|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VSGP_EBOSM|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VSGP_EBOSB|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Boniface-76) (SEBOV)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VGP_EBOSU|ENVELOPE glycoprotein|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VGP_EBOSM|ENVELOPE glycoprotein|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|VGP_EBOSB|ENVELOPE glycoprotein|Sudan ebolavirus (strain Boniface-76) (SEBOV)

Query: 1  LVCGDHL 7
          LVC DHL
Sbjct: 51 LVCKDHL 57


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2738 LVCGDDL 2744


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1551 VCQDHL 1556


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2739 LVCGDDL 2745


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1552 VCQDHL 1557


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2736 LVCGDDL 2742


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1548 VCQDHL 1553


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2756 LVCGDDL 2762


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2733 LVCGDDL 2739


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2746 LVCGDDL 2752


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1558 VCQDHL 1563


>sp|POLG_HCVNZ|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2744 LVCGDDL 2750


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1556 VCQDHL 1561


>sp|POLG_HCVK3|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2744 LVCGDDL 2750


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1556 VCQDHL 1561


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2756 LVCGDDL 2762


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2745 LVCGDDL 2751


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVJK|GENOME polyprotein|Hepatitis C virus genotype 3k

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2742 LVCGDDL 2748


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1555 VCQDHL 1560


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2756 LVCGDDL 2762


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2756 LVCGDDL 2762


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2756 LVCGDDL 2762


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2737 LVCGDDL 2743


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2741 LVCGDDL 2747


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2733 LVCGDDL 2739


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2760 LVCGDDL 2766


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1554 VCQDHL 1559


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2737 LVCGDDL 2743


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1551 VCQDHL 1556


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2734 LVCGDDL 2740


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2742 LVCGDDL 2748


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1555 VCQDHL 1560


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2734 LVCGDDL 2740


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2734 LVCGDDL 2740


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2734 LVCGDDL 2740


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    LVCGDHL 7
            LVCGD L
Sbjct: 2734 LVCGDDL 2740


Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|NEC1_EBVB9|NUCLEAR egress protein 1|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   LVCGDHLR 8
           L CGD LR
Sbjct: 296 LECGDELR 303


>sp|NEC1_EBVA8|NUCLEAR egress protein 1|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   LVCGDHLR 8
           L CGD LR
Sbjct: 296 LECGDELR 303


>sp|TRM1_HHV8P|TRIPARTITE terminase subunit 1|Human herpesvirus 8 type P

Query: 3   CGDHLRGL 10
           CG+ +RGL
Sbjct: 216 CGEPVRGL 223


>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 5   DHLRGL 10
           +HLRGL
Sbjct: 486 EHLRGL 491


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2    VCGDHL 7
            VC DHL
Sbjct: 1550 VCQDHL 1555


>sp|VP30_EBOZM|TRANSCRIPTIONAL activator VP30|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 1   LVCGDHLR 8
           L+C  HLR
Sbjct: 188 LLCETHLR 195


>sp|VP30_EBOZ5|TRANSCRIPTIONAL activator VP30|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 1   LVCGDHLR 8
           L+C  HLR
Sbjct: 188 LLCETHLR 195


>sp|VP30_EBORR|TRANSCRIPTIONAL activator VP30|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 1   LVCGDHLR 8
           L+C  HLR
Sbjct: 188 LLCETHLR 195


>sp|VP30_EBORE|TRANSCRIPTIONAL activator VP30|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 1   LVCGDHLR 8
           L+C  HLR
Sbjct: 188 LLCETHLR 195


>sp|VIF_HV2G1|VIRION infectivity factor|Human immunodeficiency virus type 2

Query: 5   DHLRGL 10
           DH RGL
Sbjct: 175 DHWRGL 180


>sp|VIF_HV2D1|VIRION infectivity factor|Human immunodeficiency virus type 2

Query: 5   DHLRGL 10
           DH RGL
Sbjct: 175 DHWRGL 180


>sp|VIF_HV2BE|VIRION infectivity factor|Human immunodeficiency virus type 2

Query: 5   DHLRGL 10
           DH RGL
Sbjct: 175 DHWRGL 180


>sp|TRM3_VZVD|TRIPARTITE terminase subunit 3|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   VCGDHL 7
           VC DH+
Sbjct: 422 VCDDHM 427


>sp|L_RABVS|LARGE structural protein|Rabies virus (strain SAD B19)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVP|LARGE structural protein|Rabies virus (strain Pasteur vaccins

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVI|LARGE structural protein|Rabies virus (strain India) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVE|LARGE structural protein|Rabies virus (strain ERA) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired bat-associated)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1418 DYLRGL 1423


>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate Human/AUS/1998)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1417 DYLRGL 1422


>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate Bat/AUS/1996)

Query: 5    DHLRGL 10
            D+LRGL
Sbjct: 1418 DYLRGL 1423


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 5  DHLRGL 10
          DH+RG+
Sbjct: 42 DHVRGV 47


>sp|POLG_SAFV|GENOME polyprotein|Saffold virus (SafV) (Human TMEV-like

Query: 4    GDHLRGL 10
            GD+LR L
Sbjct: 2101 GDYLRSL 2107


>sp|TRM3_HHV8P|TRIPARTITE terminase subunit 3|Human herpesvirus 8 type P

Query: 2   VCGDH 6
           VC DH
Sbjct: 377 VCADH 381


>sp|SPIKE_CVHOC|SPIKE glycoprotein|Human coronavirus OC43 (HCoV-OC43)

Query: 1   LVCGDH 6
            VCGD+
Sbjct: 819 FVCGDY 824


>sp|VIF_HV2NZ|VIRION infectivity factor|Human immunodeficiency virus type 2

Query: 4   GDHLRGL 10
           GD+ RGL
Sbjct: 174 GDYRRGL 180


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 2    VCGDH 6
            VC DH
Sbjct: 2101 VCSDH 2105


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 2    VCGDH 6
            VC DH
Sbjct: 2101 VCSDH 2105


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 2    VCGDH 6
            VC DH
Sbjct: 2097 VCSDH 2101


>sp|TRM3_HHV2H|TRIPARTITE terminase subunit 3|Human herpesvirus 2 (strain HG52)

Query: 2   VCGDHL 7
           +C DH+
Sbjct: 413 ICDDHM 418


>sp|TRM3_HHV11|TRIPARTITE terminase subunit 3|Human herpesvirus 1 (strain 17)

Query: 2   VCGDHL 7
           +C DH+
Sbjct: 413 ICDDHM 418


>sp|PG087_VARV|LATE transcription elongation factor OPG087|Variola virus

Query: 4   GDHLRGL 10
           GD+L+G+
Sbjct: 97  GDNLKGI 103


>sp|PG087_VAR67|LATE transcription elongation factor OPG087|Variola virus (isolate

Query: 4   GDHLRGL 10
           GD+L+G+
Sbjct: 97  GDNLKGI 103


>sp|PG087_VACCC|LATE transcription elongation factor OPG087|Vaccinia virus (strain

Query: 4   GDHLRGL 10
           GD+L+G+
Sbjct: 97  GDNLKGI 103


>sp|PG087_MONPV|LATE transcription elongation factor OPG087|Monkeypox virus (MPXV)

Query: 4   GDHLRGL 10
           GD+L+G+
Sbjct: 97  GDNLKGI 103




42|Sequence|206|215|HLRGLVSWGN

>sp|PG021_VAR67|HOST range factor p28|Variola virus (isolate Human/India/Ind3/1967)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_VACC8|HOST range factor p28|Vaccinia virus (strain LC16m8) (VACV)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_VACC0|HOST range factor p28|Vaccinia virus (strain LC16m0) (VACV)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_MONPZ|HOST range factor p28|Monkeypox virus (strain Zaire-96-I-16) (MPXV)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_MONPV|HOST range factor p28|Monkeypox virus (MPXV)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_CWPXG|HOST range factor p28|Cowpox virus (strain GRI-90 /

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|PG021_CWPXB|HOST range factor p28|Cowpox virus (strain Brighton Red)

Query: 2   LRGLVSW 8
           LRGLV+W
Sbjct: 125 LRGLVNW 131


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 3   RGLVSWGN 10
           +GL SWG+
Sbjct: 503 QGLHSWGS 510


>sp|CAPSD_TTVV5|CAPSID protein|Torque teno virus (isolate Human/Japan/SANBAN/1999)

Query: 1   HLRGLVSW 8
           H RGL  W
Sbjct: 143 HQRGLNKW 150


>sp|Y15K_HBVD3|PUTATIVE uncharacterized 15.3 kDa protein|Hepatitis B virus genotype D

Query: 3  RGLVSW 8
          +GLVSW
Sbjct: 51 KGLVSW 56


>sp|LAP_YMTV5|E3 ubiquitin-protein ligase LAP|Yaba monkey tumor virus (strain

Query: 1  HLRGLVSWGN 10
          HL+ + SW N
Sbjct: 29 HLKCMQSWIN 38


>sp|PA_I97A1|POLYMERASE acidic protein|Influenza A virus (strain A/Hong

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I97A0|POLYMERASE acidic protein|Influenza A virus (strain A/Chicken/Hong

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I36A0|POLYMERASE acidic protein|Influenza A virus (strain A/Henry/1936

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I35A3|POLYMERASE acidic protein|Influenza A virus (strain A/USA:Phila/1935

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I34A1|POLYMERASE acidic protein|Influenza A virus (strain A/Puerto

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I33A0|POLYMERASE acidic protein|Influenza A virus (strain A/Wilson-Smith/1933

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I18A0|POLYMERASE acidic protein|Influenza A virus (strain A/Brevig

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I06A0|POLYMERASE acidic protein|Influenza A virus (strain

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|PA_I000X|POLYMERASE acidic protein|Influenza A virus (strain A/X-31

Query: 2   LRGLVSW 8
           LR L SW
Sbjct: 400 LRSLASW 406


>sp|TRX1_HHV2G|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain G)

Query: 4   GLVSW 8
           GLVSW
Sbjct: 250 GLVSW 254


>sp|AN_HHV2|ALKALINE nuclease|Human herpesvirus 2 (HHV-2) (Human

Query: 1   HLRGLV 6
           HLRGL+
Sbjct: 139 HLRGLL 144


>sp|AN_HHV11|ALKALINE nuclease|Human herpesvirus 1 (strain 17)

Query: 1   HLRGLV 6
           HLRGL+
Sbjct: 149 HLRGLL 154


>sp|TRX1_HHV2H|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain HG52)

Query: 4   GLVSW 8
           GLVSW
Sbjct: 250 GLVSW 254


>sp|TRX1_HHV14|TRIPLEX capsid protein 1|Human herpesvirus 1 (strain A44)

Query: 4   GLVSW 8
           GLVSW
Sbjct: 249 GLVSW 253


>sp|TRX1_HHV11|TRIPLEX capsid protein 1|Human herpesvirus 1 (strain 17)

Query: 4   GLVSW 8
           GLVSW
Sbjct: 249 GLVSW 253


>sp|HEMA_I76A4|HEMAGGLUTININ A virus (strain A/Duck/Alberta/35/1976

Query: 5   LVSWG 9
           LVSWG
Sbjct: 544 LVSWG 548


>sp|NS1_PAVHU|INITIATOR protein NS1|Human parvovirus B19 (isolate AU)

Query: 4   GLVSWGN 10
           G+V+W N
Sbjct: 349 GMVNWNN 355


>sp|POLG_SALVA|GENOME polyprotein|Salivirus A (isolate Human/Nigeria/NG-J1/2007) (SV-A)

Query: 1    HLRGLVSW 8
            H++ L+ W
Sbjct: 1278 HIKNLLEW 1285


>sp|POLG_HKV1|GENOME polyprotein|Human klassevirus 1 (HKV-1)

Query: 1    HLRGLVSW 8
            H++ L+ W
Sbjct: 1275 HIKNLLEW 1282


>sp|NS1_PAVHV|INITIATOR protein NS1|Human parvovirus B19 (strain HV)

Query: 4   GLVSWGN 10
           G+V+W N
Sbjct: 349 GMVNWNN 355




43|Sequence|211|220|VSWGNIPCGS

>sp|LT_POVJC|LARGE T antigen|JC polyomavirus (JCPyV) (JCV)

Query: 2  SWGNIP 7
          +WGNIP
Sbjct: 23 AWGNIP 28


>sp|LT_POVBK|LARGE T antigen|BK polyomavirus (BKPyV) (Human polyomavirus

Query: 2  SWGNIP 7
          +WGN+P
Sbjct: 23 AWGNLP 28


>sp|LT_POVBA|LARGE T antigen|BK polyomavirus (strain AS) (BKPyV)

Query: 2  SWGNIP 7
          +WGN+P
Sbjct: 23 AWGNLP 28


>sp|ST_POVJC|SMALL t antigen|JC polyomavirus (JCPyV) (JCV)

Query: 2  SWGNIP 7
          +WGNIP
Sbjct: 23 AWGNIP 28


>sp|LT_POVWU|LARGE T antigen|WU polyomavirus (WUPyV)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|LT_POVK6|LARGE T antigen|KI polyomavirus (isolate Stockholm 60)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|LT_POVKI|LARGE T antigen|KI polyomavirus (isolate Stockholm 350)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|LT_POVK3|LARGE T antigen|KI polyomavirus (isolate Stockholm 380)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|VP7_ROTGA|OUTER capsid glycoprotein VP7|Rotavirus B (isolate

Query: 1   VSWGNIPCG 9
           V+WGN+  G
Sbjct: 215 VNWGNVWSG 223


>sp|ST_POVBK|SMALL t antigen|BK polyomavirus (BKPyV) (Human polyomavirus

Query: 2  SWGNIP 7
          +WGN+P
Sbjct: 23 AWGNLP 28


>sp|ST_POVBA|SMALL t antigen|BK polyomavirus (strain AS) (BKPyV)

Query: 2  SWGNIP 7
          +WGN+P
Sbjct: 23 AWGNLP 28


>sp|ST_POVWU|SMALL t antigen|WU polyomavirus (WUPyV)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|ST_POVKI|SMALL t antigen|KI polyomavirus (isolate Stockholm 350)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|ST_POVK6|SMALL t antigen|KI polyomavirus (isolate Stockholm 60)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|ST_POVK3|SMALL t antigen|KI polyomavirus (isolate Stockholm 380)

Query: 3  WGNIP 7
          WGN+P
Sbjct: 24 WGNLP 28


>sp|VP7_ROTGI|OUTER capsid glycoprotein VP7|Rotavirus B (isolate RVB/Rat/United

Query: 1   VSWGNI 6
           V+WGN+
Sbjct: 213 VNWGNV 218


>sp|POL_HV190|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 968 VIWGKIP 974


>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)

Query: 1    VSWGNIPC 8
            V W  IPC
Sbjct: 1934 VFWSVIPC 1941


>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)

Query: 1    VSWGNIPC 8
            V W  IPC
Sbjct: 1935 VFWSVIPC 1942


>sp|POL_HV1V9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 969 VIWGKIP 975


>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 963 VIWGKIP 969


>sp|POL_HV1JR|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 972 VIWGKIP 978


>sp|POL_HV2EH|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 989 VIWGEIP 995


>sp|POL_HV2UC|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 991 VIWGEIP 997


>sp|POL_HV2D2|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 990 VIWGEIP 996


>sp|VP30_MABVR|TRANSCRIPTIONAL activator VP30|Lake Victoria marburgvirus (strain Ravn-87)

Query: 5   NIPCGS 10
           NIPC S
Sbjct: 255 NIPCES 260


>sp|VP30_MABVP|TRANSCRIPTIONAL activator VP30|Lake Victoria marburgvirus (strain Popp-67)

Query: 5   NIPCGS 10
           NIPC S
Sbjct: 255 NIPCES 260


>sp|VP30_MABVM|TRANSCRIPTIONAL activator VP30|Lake Victoria marburgvirus (strain Musoke-80)

Query: 5   NIPCGS 10
           NIPC S
Sbjct: 255 NIPCES 260


>sp|VP30_MABVA|TRANSCRIPTIONAL activator VP30|Lake Victoria marburgvirus (strain Angola/2005)

Query: 5   NIPCGS 10
           NIPC S
Sbjct: 255 NIPCES 260


>sp|POL_HV1A2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 970 VIWGKIP 976


>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 991 VIWGRIP 997


>sp|POL_HV1U4|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 961 VIWGKIP 967


>sp|POL_HV2SB|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 990 VIWGRIP 996


>sp|VP30_MABVO|TRANSCRIPTIONAL activator VP30|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 5   NIPCGS 10
           NIPC S
Sbjct: 255 NIPCES 260


>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 992 VIWGRIP 998


>sp|POL_HV2RO|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 992 VIWGRIP 998


>sp|POL_HV2BE|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 991 VIWGRIP 997


>sp|POL_HV19N|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 968 VIWGKIP 974


>sp|POL_HV2KR|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 991 VIWGRIP 997


>sp|POL_HV2NZ|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   VSWGNIP 7
           V WG IP
Sbjct: 989 VIWGRIP 995


>sp|NEC2_HHV2H|NUCLEAR egress protein 2|Human herpesvirus 2 (strain HG52)

Query: 3  WGNIPC 8
          W ++PC
Sbjct: 76 WADVPC 81


>sp|EV45_HHV2H|ENVELOPE protein UL45|Human herpesvirus 2 (strain HG52)

Query: 2  SWGNIPCGS 10
          SWG  PC S
Sbjct: 53 SWGLSPCDS 61


>sp|EV45_HHV23|ENVELOPE protein UL45|Human herpesvirus 2 (strain 333)

Query: 2  SWGNIPCGS 10
          SWG  PC S
Sbjct: 53 SWGLSPCDS 61


>sp|RIR1_VZVO|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Varicella-zoster virus (strain Oka vaccine)

Query: 4   GNIPC 8
           GN PC
Sbjct: 485 GNFPC 489


>sp|RIR1_VZVD|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Varicella-zoster virus (strain Dumas)

Query: 4   GNIPC 8
           GN PC
Sbjct: 485 GNFPC 489


>sp|POLS_SINDV|STRUCTURAL polyprotein|Sindbis virus (SINV)

Query: 2    SWGNIP 7
            S+GNIP
Sbjct: 1078 SYGNIP 1083


>sp|POLS_SINDO|STRUCTURAL polyprotein|Sindbis virus subtype Ockelbo (strain

Query: 2    SWGNIP 7
            S+GNIP
Sbjct: 1078 SYGNIP 1083


>sp|ENV_HV2NZ|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 51 TWGTIQC 57


>sp|ENV_HV2SB|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 50 TWGTIQC 56


>sp|ENV_HV2RO|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 48 TWGTIQC 54


>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 4    GNIPC 8
            G+IPC
Sbjct: 2284 GSIPC 2288


>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 3    WGNIPCGS 10
            WG I C S
Sbjct: 2450 WGPIHCCS 2457


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 3    WGNIPCGS 10
            WG I C S
Sbjct: 2362 WGPIHCCS 2369


>sp|ENV_HV2ST|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 50 TWGTIQC 56


>sp|ENV_HV2BE|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 51 TWGTIQC 57


>sp|ENV_HV2CA|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 52 TWGTIQC 58


>sp|R1A_SARS2|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus

Query: 4    GNIPC 8
            G+IPC
Sbjct: 2284 GSIPC 2288


>sp|ENV_HV2KR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 50 TWGTIQC 56


>sp|ENV_HV2S2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 50 TWGTIQC 56


>sp|ENV_HV2G1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 50 TWGTIQC 56


>sp|ENV_HV2D1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG I C
Sbjct: 51 TWGTIQC 57


>sp|NEC2_HHV11|NUCLEAR egress protein 2|Human herpesvirus 1 (strain 17)

Query: 3  WGNIPC 8
          W  +PC
Sbjct: 76 WAEVPC 81


>sp|LANA1_HHV8P|PROTEIN LANA1|Human herpesvirus 8 type P

Query: 1    VSWGNIPCG 9
            + WGN P G
Sbjct: 1026 IFWGNDPYG 1034


>sp|GP_UUKS|ENVELOPMENT polyprotein|Uukuniemi virus (strain S23) (UUKV)

Query: 2   SWGNIPCGS 10
           +W NI C S
Sbjct: 385 NWANIHCFS 393


>sp|VP24_MABVP|MEMBRANE-ASSOCIATED protein VP24|Lake Victoria marburgvirus (strain Popp-67)

Query: 1  VSWGN 5
          V WGN
Sbjct: 40 VKWGN 44


>sp|VP24_MABVA|MEMBRANE-ASSOCIATED protein VP24|Lake Victoria marburgvirus (strain Angola/2005)

Query: 1  VSWGN 5
          V WGN
Sbjct: 40 VKWGN 44


>sp|VP24_MABVR|MEMBRANE-ASSOCIATED protein VP24|Lake Victoria marburgvirus (strain Ravn-87)

Query: 1  VSWGN 5
          V WGN
Sbjct: 40 VKWGN 44


>sp|VP24_MABVO|MEMBRANE-ASSOCIATED protein VP24|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 1  VSWGN 5
          V WGN
Sbjct: 40 VKWGN 44


>sp|VP24_MABVM|MEMBRANE-ASSOCIATED protein VP24|Lake Victoria marburgvirus (strain Musoke-80)

Query: 1  VSWGN 5
          V WGN
Sbjct: 40 VKWGN 44


>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)

Query: 1    VSWGN 5
            V+WGN
Sbjct: 2098 VNWGN 2102


>sp|ENV_HV2UC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG + C
Sbjct: 53 TWGTVQC 59


>sp|POLG_AIVA8|GENOME polyprotein|Aichi virus (strain Human/A846/88/1989) (AiV)

Query: 2   SWGNI 6
           SWGN+
Sbjct: 955 SWGNL 959


>sp|ENV_HV2EH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 2  SWGNIPC 8
          +WG + C
Sbjct: 51 TWGTVQC 57




44|Sequence|216|225|IPCGSKEKPG

>sp|PRIM_VZVO|DNA primase|Varicella-zoster virus (strain Oka vaccine)

Query: 1   IPCGSKEKPG 10
           +PC  KEK G
Sbjct: 791 LPCNCKEKIG 800


>sp|PRIM_VZVD|DNA primase|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 1   IPCGSKEKPG 10
           +PC  KEK G
Sbjct: 791 LPCNCKEKIG 800


>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)

Query: 2   PCGSKEKP 9
           PCG  E P
Sbjct: 802 PCGYSEPP 809


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2   PCGSKEKP 9
           PCG  E P
Sbjct: 802 PCGYSEPP 809


>sp|VE2_HPV24|REGULATORY protein E2|Human papillomavirus 24

Query: 2   PCGSKEKPG 10
           P GS+E PG
Sbjct: 207 PGGSRELPG 215


>sp|RDRP_ROTYO|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTWI|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHW|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHT|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHS|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHP|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHL|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHK|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHD|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTHC|RNA-DIRECTED RNA polymerase|Rotavirus C (isolate RVC/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 452 IPLGRRDVPG 461


>sp|RDRP_ROTH7|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTH6|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTH3|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROTAD|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|RDRP_ROT41|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate

Query: 1   IPCGSKEKPG 10
           IP G ++ PG
Sbjct: 447 IPLGRRDVPG 456


>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain

Query: 2  PCGSKEKP 9
          P G+++KP
Sbjct: 51 PVGTQQKP 58


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1    IPCGSKE 7
            + CGSKE
Sbjct: 2101 LDCGSKE 2107


>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)

Query: 2  PCGSKEKP 9
          P G+++KP
Sbjct: 51 PVGTQQKP 58


>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)

Query: 2  PCGSKEKP 9
          P G+++KP
Sbjct: 51 PVGTQQKP 58


>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)

Query: 2  PCGSKEKP 9
          P G+++KP
Sbjct: 51 PVGTQQKP 58


>sp|POLS_SFV|STRUCTURAL polyprotein|Semliki forest virus (SFV)

Query: 3   CGSKEKP 9
           C +KEKP
Sbjct: 883 CSTKEKP 889


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 1    IPCGSKEKP 9
            + CG   KP
Sbjct: 1684 VTCGKSPKP 1692


>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 1    IPCGSKEKP 9
            + CG   KP
Sbjct: 1684 VTCGKSPKP 1692


>sp|POLS_RRVN|STRUCTURAL polyprotein|Ross river virus (strain NB5092)

Query: 3   CGSKEKP 9
           C SKE+P
Sbjct: 884 CSSKEQP 890


>sp|CAPSD_HPBVH|CAPSID protein precursor|Human picobirnavirus (strain

Query: 1   IPCGSKEKP 9
           +P G   KP
Sbjct: 429 VPAGDTSKP 437


>sp|POLS_RRVT|STRUCTURAL polyprotein|Ross river virus (strain T48)

Query: 3   CGSKEKP 9
           C SKE+P
Sbjct: 884 CSSKEQP 890


>sp|VL2_HPV11|MINOR capsid protein L2|Human papillomavirus 11

Query: 1  IPCGSKEKPG 10
          IP GS  KP 
Sbjct: 71 IPLGSSPKPA 80




45|Sequence|221|230|KEKPGVYTNV

>sp|CAPSD_TTVV2|CAPSID protein|Torque teno virus (isolate Human/Japan/TRM1/1999)

Query: 2   EKPGVYTNV 10
           E PGVYT++
Sbjct: 424 ETPGVYTDI 432


>sp|CAPSP_ADE12|PENTON protein|Human adenovirus A serotype 12

Query: 4   PGVYTN 9
           PGVYTN
Sbjct: 218 PGVYTN 223


>sp|CAPSP_ADE02|PENTON protein|Human adenovirus C serotype 2

Query: 4   PGVYTN 9
           PGVYTN
Sbjct: 228 PGVYTN 233


>sp|CAPSP_ADE05|PENTON protein|Human adenovirus C serotype 5

Query: 4   PGVYTN 9
           PGVYTN
Sbjct: 228 PGVYTN 233


>sp|CAPSD_TTVV7|CAPSID protein|Torque teno virus (isolate Human/China/CT39F/2001)

Query: 1   KEKPGVYTNV 10
           +E PG+YT+V
Sbjct: 414 REFPGLYTDV 423


>sp|CAPSD_TTVVG|PROBABLE capsid and replication-associated protein|Torque teno virus

Query: 2   EKPGVYTNV 10
           E PG YT++
Sbjct: 424 ETPGAYTDI 432


>sp|MCP_HHV8P|MAJOR capsid protein|Human herpesvirus 8 type P

Query: 5  GVYTNV 10
          GVYTNV
Sbjct: 55 GVYTNV 60


>sp|R1A_CVHNL|REPLICASE polyprotein 1a|Human coronavirus NL63 (HCoV-NL63)

Query: 4    PGVYTNV 10
            PGV TNV
Sbjct: 2559 PGVPTNV 2565


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 4    PGVYTNV 10
            PGV TNV
Sbjct: 2559 PGVPTNV 2565


>sp|ENV_HV1VI|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   KEKPGVYTN 9
           +EKPG   N
Sbjct: 138 QEKPGAMQN 146


>sp|VL1_HPV6B|MAJOR capsid protein L1|Human papillomavirus type 6b

Query: 1   KEKPGVYTNV 10
           KEKP  Y N+
Sbjct: 430 KEKPDPYKNL 439


>sp|VL1_HPV6A|MAJOR capsid protein L1|Human papillomavirus type 6a

Query: 1   KEKPGVYTNV 10
           KEKP  Y N+
Sbjct: 430 KEKPDPYKNL 439


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 3    KPGVY 7
            KPG+Y
Sbjct: 1518 KPGIY 1522


>sp|MCP_EBVG|MAJOR capsid protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 5  GVYTN 9
          GVYTN
Sbjct: 57 GVYTN 61


>sp|MCP_EBVB9|MAJOR capsid protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 5  GVYTN 9
          GVYTN
Sbjct: 57 GVYTN 61


>sp|MCP_EBVA8|MAJOR capsid protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 5  GVYTN 9
          GVYTN
Sbjct: 57 GVYTN 61


>sp|UL120_HCMVM|MEMBRANE protein UL120|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   KPGVYTN 9
           +PG Y N
Sbjct: 108 EPGTYVN 114




46|Sequence|226|235|VYTNVCRYTN

>sp|DPOL_ORFN2|DNA polymerase|Orf virus (strain NZ2) (OV

Query: 1   VYTNVCRYTN 10
           +Y NVC Y N
Sbjct: 555 LYPNVCIYAN 564


>sp|VL1_HPV27|MAJOR capsid protein L1|Human papillomavirus 27

Query: 1   VYTNVCRYTN 10
           + TNVC+Y +
Sbjct: 330 ICTNVCKYPD 339


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6822 YTQLCQYLN 6830


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6843 YTQLCQYLN 6851


>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6845 YTQLCQYLN 6853


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6475 YTQLCQYLN 6483


Query: 4    NVCRYTN 10
            +VC+YT+
Sbjct: 6185 SVCKYTD 6191


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6880 YTQLCQYLN 6888


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6900 YTQLCQYLN 6908


>sp|TEG1_HHV1F|TEGUMENT protein UL46|Human herpesvirus 1 (strain F)

Query: 1   VYTNVCRYT 9
           VY NVC  T
Sbjct: 630 VYENVCANT 638


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6930 YTQLCQYLN 6938


>sp|VU8_HHV7J|PROTEIN U8|Human herpesvirus 7 (strain JI)

Query: 4  NVCRYTN 10
          N+CR+T+
Sbjct: 30 NLCRFTD 36


>sp|VL1_HPV57|MAJOR capsid protein L1|Human papillomavirus 57

Query: 3   TNVCRYTN 10
           TN+C+Y +
Sbjct: 239 TNICKYPD 246


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    YTNVCRYTN 10
            YT +C+Y N
Sbjct: 6504 YTQLCQYFN 6512


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 1    VYTNVCRYTN 10
            VYT +C + N
Sbjct: 1940 VYTIICNHIN 1949


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 1    VYTNVCRYTN 10
            VYT +C + N
Sbjct: 1940 VYTIICNHIN 1949


>sp|U7_HHV6U|PROTEIN U7|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   VYTNVCRYTN 10
           V+T  CR  N
Sbjct: 244 VWTGTCRLAN 253


>sp|POLG_WNV9|GENOME polyprotein|West Nile virus (strain NY-99)

Query: 2    YTNVCRY 8
            YT+V RY
Sbjct: 1194 YTDVLRY 1200


>sp|POLG_WNV|GENOME polyprotein|West Nile virus (WNV)

Query: 2    YTNVCRY 8
            YT+V RY
Sbjct: 1190 YTDVLRY 1196


>sp|POLG_KUNJM|GENOME polyprotein|Kunjin virus (strain MRM61C)

Query: 2    YTNVCRY 8
            YT+V RY
Sbjct: 1194 YTDVLRY 1200


>sp|L_VSIVS|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 3   TNVCR 7
           TN+CR
Sbjct: 197 TNICR 201


>sp|L_VSIVN|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 3   TNVCR 7
           TN+CR
Sbjct: 197 TNICR 201


>sp|L_VSIVM|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 3   TNVCR 7
           TN+CR
Sbjct: 197 TNICR 201


>sp|L_VSIVC|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 3   TNVCR 7
           TN+CR
Sbjct: 197 TNICR 201


>sp|L_VSIVA|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 3   TNVCR 7
           TN+CR
Sbjct: 197 TNICR 201


>sp|U8_HHV6U|PROTEIN U8|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   VYTNVCRYTN 10
           V+T  CR  N
Sbjct: 244 VWTGTCRLAN 253


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   VYTNVCRYTN 10
           VY N  RY +
Sbjct: 278 VYNNTARYID 287


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 1   VYTNVCRYTN 10
           VY N  RY +
Sbjct: 278 VYNNTARYID 287


>sp|NCAP_INCCA|NUCLEOPROTEIN C virus (strain C/California/1978)

Query: 2   YTNVCRY 8
           +TN C Y
Sbjct: 297 FTNFCAY 303


>sp|RIR1_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus

Query: 1   VYTNVCRYTN 10
           VY N  RY +
Sbjct: 278 VYNNTARYID 287


>sp|RIR1_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus (isolate

Query: 1   VYTNVCRYTN 10
           VY N  RY +
Sbjct: 278 VYNNTARYID 287


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 5    VCRYT 9
            +CRYT
Sbjct: 1039 LCRYT 1043


>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 1   VYTNVCRYTN 10
           VY N  RY +
Sbjct: 278 VYNNTARYID 287


>sp|VL1_HPV2A|MAJOR capsid protein L1|Human papillomavirus type 2a

Query: 1   VYTNVCRYTN 10
           + TN C+Y +
Sbjct: 236 ICTNTCKYPD 245




47|Sequence|231|244|CRYTNWIQKTIQAK

>sp|CAPSD_TTVV6|CAPSID protein|Torque teno virus (isolate Human/China/CT23F/2001)

Query: 3   YTNWIQKTIQAK 14
           Y +W+QK+I ++
Sbjct: 464 YIDWVQKSIGSQ 475


>sp|NSP3_ROTH7|NON-STRUCTURAL protein 3|Rotavirus A (isolate RVA/Human/United

Query: 2   RYTNWIQK 9
           +YT+W+QK
Sbjct: 188 KYTSWVQK 195


>sp|NSP3_ROT41|NON-STRUCTURAL protein 3|Rotavirus A (isolate

Query: 2   RYTNWIQK 9
           +YT+W+QK
Sbjct: 191 KYTSWVQK 198


>sp|POLG_EC30B|GENOME polyprotein|Echovirus 30 (strain Bastianni)

Query: 2   RYTNWIQKTIQ 12
           RYTNW   T Q
Sbjct: 658 RYTNWEITTRQ 668


>sp|ITP_HHV7J|INNER tegument protein|Human herpesvirus 7 (strain JI)

Query: 3   YTN-WIQKTI 11
           Y N WIQKTI
Sbjct: 663 YVNPWIQKTI 672


>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)

Query: 1    CRYTNWIQKTIQA 13
            CR  NW +K  +A
Sbjct: 1475 CRDKNWEKKIQEA 1487


>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)

Query: 1    CRYTNWIQKTIQA 13
            CR  NW +K  +A
Sbjct: 1475 CRDKNWEKKIQEA 1487


>sp|BRRF1_EBVG|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   CRYTNWIQKTI 11
           C Y N+IQ +I
Sbjct: 222 CIYYNYIQGSI 232


>sp|BRRF1_EBVB9|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   CRYTNWIQKTI 11
           C Y N+IQ +I
Sbjct: 222 CIYYNYIQGSI 232


>sp|BRRF1_EBVA8|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   CRYTNWIQKTI 11
           C Y N+IQ +I
Sbjct: 222 CIYYNYIQGSI 232


>sp|CAPSD_HASV8|CAPSID polyprotein VP90|Human astrovirus-8 (HAstV-8)

Query: 5   NWIQKTI 11
           NW+ KTI
Sbjct: 451 NWVNKTI 457


>sp|POLG_DEN23|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 229 SNWIQK 234


>sp|PB2_INCBE|POLYMERASE basic protein 2|Influenza C virus (strain C/Berlin/1/1985)

Query: 5   NWIQKT 10
           NWIQK+
Sbjct: 451 NWIQKS 456


>sp|RUVV_MONPV|RESOLVASE OPG149|Monkeypox virus (MPXV)

Query: 1   CRYTNWIQK 9
           C+Y N+I+K
Sbjct: 178 CKYRNYIKK 186


>sp|PB2_INCAA|POLYMERASE basic protein 2|Influenza C virus (strain C/Ann

Query: 5   NWIQKT 10
           NWIQK+
Sbjct: 451 NWIQKS 456


>sp|PB2_INCJJ|POLYMERASE basic protein 2|Influenza C virus (strain C/JJ/1950)

Query: 5   NWIQKT 10
           NWIQK+
Sbjct: 451 NWIQKS 456


>sp|PB2_INCJH|POLYMERASE basic protein 2|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 5   NWIQKT 10
           NWIQK+
Sbjct: 451 NWIQKS 456


>sp|POLG_DEN2T|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 229 SNWIQK 234


>sp|POLG_DEN2H|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 278 SNWIQK 283


>sp|ITP_HHV6U|INNER tegument protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   YTNWIQKTI 11
           YTN++QK +
Sbjct: 803 YTNYLQKYV 811


>sp|POLG_DEN2U|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 409 SNWIQK 414


>sp|MC132_MCV1|PROTEIN MC132|Molluscum contagiosum virus subtype 1

Query: 2   RYTNWI 7
           +YTNWI
Sbjct: 201 KYTNWI 206


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN2N|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 4   TNWIQK 9
           +NWIQK
Sbjct: 509 SNWIQK 514


>sp|UL37_HHV6G|CAPSID assembly protein UL37 homolog|Human herpesvirus 6A (strain GS)

Query: 3   YTNWIQKTI 11
           YTN++QK +
Sbjct: 519 YTNYLQKYV 527


>sp|U21_HHV7R|U21 glycoprotein|Human herpesvirus 7 (strain RK)

Query: 1   CRYTNW 6
           C+YT W
Sbjct: 260 CKYTGW 265


>sp|U21_HHV7J|U21 glycoprotein|Human herpesvirus 7 (strain JI)

Query: 1   CRYTNW 6
           C+YT W
Sbjct: 260 CKYTGW 265


>sp|PORTL_EBVA8|PORTAL protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   RYTNWIQKT 10
           RY +WI  T
Sbjct: 140 RYVDWICAT 148


>sp|POLG_EC12T|GENOME polyprotein|Echovirus 12 (strain Travis)

Query: 2   RYTNWIQKTIQ 12
           RY NW   T Q
Sbjct: 657 RYANWRINTRQ 667


>sp|PORTL_EBVG|PORTAL protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   RYTNWIQKT 10
           RY +WI  T
Sbjct: 140 RYVDWICAT 148


>sp|PORTL_EBVB9|PORTAL protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   RYTNWIQKT 10
           RY +WI  T
Sbjct: 140 RYVDWICAT 148


>sp|L_VSNJO|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus

Query: 2    RYTNWIQKTI 11
            RY +W +K +
Sbjct: 1090 RYKSWTRKVV 1099


>sp|GP_RVFVZ|ENVELOPMENT polyprotein|Rift valley fever virus (strain

Query: 2   RYTNW 6
           R+TNW
Sbjct: 881 RFTNW 885


>sp|L_VSNJH|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus

Query: 2    RYTNWIQKTI 11
            RY +W +K +
Sbjct: 1090 RYKSWTRKVV 1099


>sp|GP_RVFV|ENVELOPMENT polyprotein|Rift valley fever virus (RVFV)

Query: 2   RYTNW 6
           R+TNW
Sbjct: 881 RFTNW 885


>sp|PA_INBLE|POLYMERASE acidic protein|Influenza B virus (strain B/Lee/1940)

Query: 1   CRYTNWIQ 8
           CR   W+Q
Sbjct: 397 CRVAAWVQ 404


>sp|POLG_CXB4J|GENOME polyprotein|Coxsackievirus B4 (strain JVB /

Query: 2   RYTNWIQKTIQ 12
           RY  W+  T Q
Sbjct: 657 RYAEWVINTRQ 667


>sp|PA_INBAC|POLYMERASE acidic protein|Influenza B virus (strain B/Ann

Query: 1   CRYTNWIQ 8
           CR   W+Q
Sbjct: 397 CRVAAWVQ 404


>sp|PA_INBP9|POLYMERASE acidic protein|Influenza B virus (strain B/Panama/45/1990)

Query: 1   CRYTNWIQ 8
           CR   W+Q
Sbjct: 397 CRVAAWVQ 404


>sp|PA_INBAD|POLYMERASE acidic protein|Influenza B virus (strain B/Ann

Query: 1   CRYTNWIQ 8
           CR   W+Q
Sbjct: 397 CRVAAWVQ 404


>sp|NSP3_ROTHW|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 191 KYNTWVQK 198


>sp|PA_INBSI|POLYMERASE acidic protein|Influenza B virus (strain B/Singapore/222/1979)

Query: 1   CRYTNWIQ 8
           CR   W+Q
Sbjct: 397 CRVAAWVQ 404


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 2   RYTNWIQKTIQ 12
           RY  W+  T Q
Sbjct: 657 RYAEWVINTRQ 667


>sp|NSP3_ROTHT|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 191 KYNTWVQK 198


>sp|NSP3_ROTAM|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 188 KYNTWVQK 195


>sp|NSP3_ROTWI|NON-STRUCTURAL protein 3|Rotavirus A (isolate RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 191 KYNTWVQK 198


>sp|NSP3_ROTHP|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 188 KYNTWVQK 195


>sp|NSP3_ROTAD|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y  W+QK
Sbjct: 188 KYNTWVQK 195


>sp|OBP_HHV6Z|REPLICATION origin-binding protein|Human herpesvirus 6B (strain Z29)

Query: 2   RYTNWIQKT 10
           RY ++I+KT
Sbjct: 399 RYRHYIEKT 407


>sp|OBP_HHV6U|REPLICATION origin-binding protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   RYTNWIQKT 10
           RY ++I+KT
Sbjct: 399 RYRHYIEKT 407


>sp|L_JUNIN|RNA-DIRECTED RNA polymerase L|Junin mammarenavirus (JUNV) (Junn mammarenavirus)

Query: 3    YTNW 6
            YTNW
Sbjct: 1817 YTNW 1820


>sp|PG166_MONPV|PROTEIN OPG166|Monkeypox virus (MPXV)

Query: 2   RYTNW 6
           R+TNW
Sbjct: 114 RHTNW 118


>sp|PG166_VARV|PROTEIN OPG166|Variola virus

Query: 2   RYTNW 6
           R+TNW
Sbjct: 114 RHTNW 118


>sp|PG166_VAR67|PROTEIN OPG166|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2   RYTNW 6
           R+TNW
Sbjct: 114 RHTNW 118


>sp|ENV_HV2UC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 5   NWIQKTIQA 13
           +W Q+ IQA
Sbjct: 806 SWFQEAIQA 814


>sp|NSP3_ROTHS|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/Japan/S2/1980/G2P1B[4])

Query: 2   RYTNWIQK 9
           +Y NW+ K
Sbjct: 191 KYNNWVIK 198


>sp|NSP3_ROTHL|NON-STRUCTURAL protein 3|Rotavirus A (strain

Query: 2   RYTNWIQK 9
           +Y NW+ K
Sbjct: 191 KYNNWVIK 198


>sp|NSP3_ROTHD|NON-STRUCTURAL protein 3|Rotavirus A (strain RVA/Human/United

Query: 2   RYTNWIQK 9
           +Y NW+ K
Sbjct: 191 KYNNWVIK 198


>sp|VPX_HV2BE|PROTEIN Vpx|Human immunodeficiency virus type 2

Query: 6  WIQKTIQA 13
          W+++TI+A
Sbjct: 24 WLERTIEA 31


>sp|NSP3_ROTH6|NON-STRUCTURAL protein 3|Rotavirus A (strain

Query: 2   RYTNWIQK 9
           +Y NW+ K
Sbjct: 191 KYNNWVIK 198


>sp|US09_HCMVM|MEMBRANE glycoprotein US9|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   CRYTNWIQKTIQAK 14
           C Y  WI+  ++ +
Sbjct: 218 CVYLRWIRPWVRGR 231


>sp|US09_HCMVA|UNIQUE short US9 glycoprotein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   CRYTNWIQKTIQAK 14
           C Y  WI+  ++ +
Sbjct: 218 CVYLRWIRPWVRGR 231


>sp|CAPSD_HASV6|CAPSID polyprotein VP90|Human astrovirus-6 (HAstV-6)

Query: 6   WIQKTIQ 12
           W+ KTI+
Sbjct: 452 WVNKTIE 458


>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)

Query: 1    CRYTNWIQKT 10
            C    W++KT
Sbjct: 2236 CNELGWLEKT 2245