PCS1N_HUMAN Blast Output
Archaea
1|Sequence|1|10|MAGSPLLWGP

>sp|Y578_METJA|UNCHARACTERIZED protein MJ0578|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GSPLLWG 9
G PL+WG
Sbjct: 132 GFPLIWG 138


>sp|SYL_PYRHO|LEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 515 GTPLPWDP 522


>sp|TTRA_ARCFU|TETRATHIONATE reductase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GSPLLWGP 10
G P+ WGP
Sbjct: 585 GEPVRWGP 592


>sp|SYL_PYRAB|LEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 515 GTPLPWDP 522


>sp|SYL_PYRFU|LEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 515 GTPLPWDP 522


>sp|SYL_THEON|LEUCINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 515 GTPLPWDP 522


>sp|SYL_THEKO|LEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 515 GTPLPWDP 522


>sp|SYL_METKA|LEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 GSPLLWGP 10
G+PL W P
Sbjct: 499 GTPLPWDP 506


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 1 MAGSPLLWGP 10
+AGSP++ P
Sbjct: 767 LAGSPVIAAP 776


>sp|IF2P_PYRFU|PROBABLE translation initiation factor IF-2|Pyrococcus furiosus (strain ATCC

Query: 1 MAGSPLLWGP 10
+AGSP++ P
Sbjct: 707 LAGSPVIAAP 716


>sp|IF2P_PYRAB|PROBABLE translation initiation factor IF-2|Pyrococcus abyssi (strain GE5 /

Query: 1 MAGSPLLWGP 10
+AGSP++ P
Sbjct: 715 LAGSPVIAAP 724


>sp|IF2P_METTH|PROBABLE translation initiation factor IF-2|Methanothermobacter

Query: 1 MAGSPL 6
MAGSPL
Sbjct: 319 MAGSPL 324


>sp|HMDH_AERPE|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Aeropyrum pernix (strain ATCC 700893

Query: 1 MAGSPLLWGP 10
M +PLLW P
Sbjct: 138 MTRAPLLWTP 147


>sp|PYCB_METTH|PYRUVATE carboxylase subunit B|Methanothermobacter thermautotrophicus

Query: 2 AGSPLLWG 9
A SPL WG
Sbjct: 229 AISPLSWG 236


>sp|CMR4_PYRFU|CRISPR system Cmr endoribonuclease Cmr4|Pyrococcus furiosus (strain ATCC

Query: 3 GSPLLWG 9
G P++WG
Sbjct: 36 GFPVIWG 42


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 4 SPLLW 8
SPLLW
Sbjct: 863 SPLLW 867


>sp|GCSPB_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 5 PLLWG 9
PL+WG
Sbjct: 350 PLIWG 354


>sp|QOXM_SULAC|QUINOL oxidase subunit 1/3|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 MAGSPLLW 8
+ GSP+LW
Sbjct: 222 LGGSPVLW 229




2|Sequence|6|15|LLWGPRAGGV

>sp|RFCL_IGNH4|REPLICATION factor C large subunit|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 LLWGPRAGG 9
LLWGP G
Sbjct: 47 LLWGPPGVG 55


>sp|SYR_METTP|ARGININE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 WGPRAGGV 10
WG R+G V
Sbjct: 105 WGRRSGSV 112


>sp|TOP6B_NATPD|TYPE 2 DNA topoisomerase 6|Natronomonas pharaonis (strain ATCC 35678

Query: 1 LLWGPRAGG 9
L W P GG
Sbjct: 758 LKWSPTVGG 766


>sp|KAE1_AERPE|TRNA N6-adenosine threonylcarbamoyltransferase|Aeropyrum pernix

Query: 3 WGPRAGGV 10
W PR GG+
Sbjct: 41 WTPREGGI 48


>sp|RL2_METLZ|LARGE ribosomal subunit protein uL2|Methanocorpusculum labreanum

Query: 1 LLWGPRA 7
L+WGP A
Sbjct: 83 LVWGPEA 89


>sp|NADB_HALSA|L-ASPARTATE oxidase|Halobacterium salinarum (strain ATCC 700922

Query: 1 LLWGPRAG 8
L+WG RAG
Sbjct: 379 LVWGLRAG 386


>sp|RFCL_PYRCJ|REPLICATION factor C large subunit|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 LLWGP 5
LLWGP
Sbjct: 60 LLWGP 64




3|Sequence|11|20|RAGGVGLLVL

>sp|Y1485_METJA|UNCHARACTERIZED cation transporter MJ1485|Methanocaldococcus jannaschii (strain

Query: 3 GGVGLLVL 10
GGVG+LVL
Sbjct: 143 GGVGILVL 150


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 3 GGVGLLVL 10
GG GLLVL
Sbjct: 412 GGEGLLVL 419


>sp|IMDH_NITMS|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 RAGGVGLL 8
RAGG+G++
Sbjct: 62 RAGGIGII 69


>sp|CARB_HYPBU|CARBAMOYL phosphate synthase large chain|Hyperthermus butylicus (strain DSM

Query: 1 RAGGVGLLV 9
R GGVGLL+
Sbjct: 1004 RMGGVGLLM 1012


>sp|COBS_SULTO|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 AGGVGLLVL 10
AGG+GLL++
Sbjct: 107 AGGIGLLLV 115


>sp|PYRC_SULTO|DIHYDROOROTASE tokodaii (strain DSM 16993

Query: 3 GGVGLLV 9
GG+GL++
Sbjct: 75 GGIGLII 81




4|Sequence|16|25|GLLVLLLLGL

***** No hits found ******


5|Sequence|21|30|LLLGLFRPPP

>sp|TIAS_IGNAA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Ignisphaera aggregans (strain

Query: 3 LGLFRPPP 10
LGL+ PPP
Sbjct: 418 LGLYIPPP 425


>sp|GLNA_ARCFU|GLUTAMINE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GLFRPPP 10
G FRPPP
Sbjct: 196 GYFRPPP 202


>sp|Y308_METJA|UNCHARACTERIZED protein MJ0308|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LGLFRPPP 10
+G+FR PP
Sbjct: 78 MGVFRNPP 85


>sp|SYY_PYRAB|TYROSINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 LLLGLFRPP 9
LLLGL PP
Sbjct: 225 LLLGLQEPP 233


>sp|SYY_THESM|TYROSINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 1 LLLGLFRPP 9
LLLGL PP
Sbjct: 225 LLLGLQEPP 233


>sp|SYY_PYRHO|TYROSINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LLLGLFRPP 9
LLLGL PP
Sbjct: 225 LLLGLQEPP 233


>sp|SYY_PYRFU|TYROSINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LLLGLFRPP 9
LLLGL PP
Sbjct: 225 LLLGLQEPP 233


>sp|GCSPA_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 248 LALGLIKPP 256


>sp|GCSPA_SACI3|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|GCSPA_SACI7|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|GCSPA_SACI6|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|GCSPA_SACI4|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|GCSPA_SACI2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|GCSPA_SACI1|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|DNLI_PYRAR|DNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 LLLGLFRPP 9
L+LG RPP
Sbjct: 44 LILGDLRPP 52


>sp|GCSPA_SACS2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 249 LSLGLIKPP 257


>sp|CPGS_METKA|CYCLIC 2,3-diphosphoglycerate synthetase|Methanopyrus kandleri (strain

Query: 1 LLLGLFRPPP 10
++L +FRP P
Sbjct: 328 VVLSVFRPKP 337


>sp|GSA_SULTO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LLLGLFRPP 9
L LG+F PP
Sbjct: 380 LKLGVFIPP 388


>sp|TRKA_ARCFU|TRK system potassium uptake protein|Archaeoglobus fulgidus (strain ATCC

Query: 1 LLLGLFRPP 9
+L G+F PP
Sbjct: 212 MLKGIFGPP 220


>sp|GCSPA_SULAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfolobus

Query: 1 LLLGLFRPP 9
L LGL +PP
Sbjct: 248 LSLGLIKPP 256


>sp|XACH_HALVD|XYLOSE/ARABINOSE import permease protein XacH|Haloferax volcanii (strain ATCC 29605

Query: 2 LLGLFRPP 9
L+G +RPP
Sbjct: 259 LVGRYRPP 266


>sp|GCSPA_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 3 LGLFRPP 9
LGL +PP
Sbjct: 257 LGLIKPP 263


>sp|DCD_SACS2|DCTP deaminase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 LGLFRPP 9
LGLF PP
Sbjct: 103 LGLFIPP 109




6|Sequence|26|35|FRPPPALCAR

>sp|RFCL_PYRNV|REPLICATION factor C large subunit|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 FRPPPALCAR 10
FR P CAR
Sbjct: 35 FRAPKEFCAR 44


>sp|GLNA_ARCFU|GLUTAMINE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FRPPP 5
FRPPP
Sbjct: 198 FRPPP 202


>sp|TOP6B_ARCFU|TYPE 2 DNA topoisomerase 6|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FRPPPALC 8
F PPP C
Sbjct: 300 FLPPPTDC 307


>sp|Y3016_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 4 PPALC 8
PPALC
Sbjct: 305 PPALC 309


>sp|RIBL_HALLT|FAD synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 RPPPALCA 9
+P P LCA
Sbjct: 44 KPAPILCA 51


>sp|KORB_METTH|2-OXOGLUTARATE synthase subunit KorB|Methanothermobacter thermautotrophicus

Query: 2 RPPPALCAR 10
RP P LC +
Sbjct: 255 RPQPELCEK 263


>sp|Y1013_ARCFU|UNCHARACTERIZED protein AF_1013|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FRPPPA 6
F PPPA
Sbjct: 124 FTPPPA 129


>sp|IORA_METTM|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter marburgensis

Query: 4 PPALC 8
PPALC
Sbjct: 368 PPALC 372


>sp|PYRC_PYRAE|DIHYDROOROTASE aerophilum (strain ATCC 51768

Query: 3 PPPALCA 9
PPP +C+
Sbjct: 278 PPPGICS 284


>sp|Y1576_ARCFU|UNCHARACTERIZED protein AF_1576|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 RPPPALCAR 10
PP ALC R
Sbjct: 35 HPPDALCLR 43




7|Sequence|31|40|ALCARPVKEP

>sp|RS5_METMJ|SMALL ribosomal subunit protein uS5|Methanoculleus marisnigri (strain

Query: 4 ARPVKEP 10
RP+KEP
Sbjct: 33 GRPIKEP 39


>sp|RS5_METB6|SMALL ribosomal subunit protein uS5|Methanoregula boonei (strain DSM

Query: 4 ARPVKEP 10
RP+KEP
Sbjct: 33 GRPIKEP 39


>sp|AROA_METLZ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocorpusculum labreanum (strain ATCC

Query: 1 ALCARPVK 8
+LC+RP+K
Sbjct: 116 SLCSRPMK 123


>sp|ATGT_PYRAE|TRNA-GUANINE(15) transglycosylase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 LCARPVKE 9
LC +PVKE
Sbjct: 277 LCHKPVKE 284


>sp|SYM_PYRHO|METHIONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ALCARPV 7
ALC RP+
Sbjct: 174 ALCGRPI 180


>sp|SYM_PYRAB|METHIONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 ALCARPV 7
A+C RP+
Sbjct: 174 AICGRPI 180


>sp|RL34_THEPD|LARGE ribosomal subunit protein eL34|Thermofilum pendens (strain DSM

Query: 1 ALCARPVK 8
A+C RP++
Sbjct: 38 AICGRPIQ 45




8|Sequence|36|45|PVKEPRGLSA

>sp|TYSY_METKA|PUTATIVE thymidylate synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 PVKEPRGLSA 10
PVKE RGL A
Sbjct: 39 PVKEVRGLIA 48


>sp|RL13_METMP|LARGE ribosomal subunit protein uL13|Methanococcus maripaludis (strain

Query: 1 PVKEPRGLSA 10
P K+PRG+ A
Sbjct: 85 PYKKPRGVEA 94


>sp|RLMH_METTP|PUTATIVE ribosomal RNA large subunit|Methanothrix thermoacetophila (strain

Query: 1 PVKEPRGLSA 10
P+KE RG+ A
Sbjct: 43 PIKEGRGILA 52


>sp|TRPF_METJA|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PVKEPRGLS 9
PVK PR +S
Sbjct: 36 PVKTPRKIS 44


>sp|Y3251_SACS2|UPF0282 protein SSO3251|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PVKEPRGLS 9
P K PRGL+
Sbjct: 292 PAKIPRGLA 300


>sp|Y2122_SACI6|UPF0282 protein M164_2122|Saccharolobus islandicus (strain M.16.4 /

Query: 1 PVKEPRGLS 9
P K PRGL+
Sbjct: 292 PAKIPRGLA 300


>sp|Y277_SULAC|UPF0282 protein Saci_0277|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PVKEPRGLS 9
P K PRGL+
Sbjct: 292 PAKIPRGLA 300


>sp|PRIS_AERPE|DNA primase small subunit PriS|Aeropyrum pernix (strain ATCC 700893

Query: 1 PVKEPRGLS 9
PV+EPR ++
Sbjct: 23 PVEEPRDIA 31


>sp|AATA_NATPD|A-TYPE ATP synthase subunit A|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PVKEPR 6
PV+EPR
Sbjct: 197 PVREPR 202


>sp|AATA_HALWD|A-TYPE ATP synthase subunit A|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PVKEPR 6
PV+EPR
Sbjct: 197 PVREPR 202




9|Sequence|41|50|RGLSAASPPL

>sp|PANB_HALMA|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GLSAASPPL 10
GLS +SPP
Sbjct: 218 GLSESSPPF 226


>sp|PHR_HALSA|DEOXYRIBODIPYRIMIDINE photo-lyase|Halobacterium salinarum (strain ATCC 700922

Query: 1 RGLSAASP 8
RGL+AA+P
Sbjct: 16 RGLAAAAP 23


>sp|Y977_METKA|UNCHARACTERIZED glycosyltransferase MK0977|Methanopyrus kandleri (strain AV19 /

Query: 1 RGLSAASPP 9
RGL A PP
Sbjct: 293 RGLGVAVPP 301




10|Sequence|46|55|ASPPLAETGA

>sp|MCRG_METBF|METHYL-COENZYME M reductase subunit gamma|Methanosarcina barkeri (strain Fusaro /

Query: 3 PPLAETG 9
PPLAE G
Sbjct: 55 PPLAEMG 61


>sp|PYRC_METTH|DIHYDROOROTASE thermautotrophicus (strain ATCC 29096

Query: 1 ASPPLAE 7
A PPLAE
Sbjct: 195 ARPPLAE 201




11|Sequence|51|60|AETGAPRRFR

>sp|SRP54_METS3|SIGNAL recognition particle 54 kDa|Methanobrevibacter smithii (strain ATCC

Query: 1 AETGAPRRF 9
AETGAP +F
Sbjct: 260 AETGAPIKF 268


>sp|DNLI_METBU|DNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 ETGAPRRFR 10
E GAPR F+
Sbjct: 318 ENGAPRAFQ 326


>sp|PURA1_METAC|ADENYLOSUCCINATE synthetase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 AETGAPRRF 9
A TG PRR
Sbjct: 300 ARTGRPRRL 308


>sp|RL1_PYRAR|LARGE ribosomal subunit protein uL1|Pyrobaculum arsenaticum (strain DSM

Query: 2 ETGAPRRFR 10
+ G PRRFR
Sbjct: 19 KAGKPRRFR 27


>sp|DNLI_METKA|DNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 ETGAPRRFR 10
ETG PR F+
Sbjct: 307 ETGKPRPFQ 315


>sp|DNLI_IGNH4|DNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 ETGAPRRFR 10
ETG PR F+
Sbjct: 316 ETGEPRPFQ 324


>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 3 TGAPRRFR 10
+GAP+R R
Sbjct: 319 SGAPKRIR 326


>sp|RL1_PYRIL|LARGE ribosomal subunit protein uL1|Pyrobaculum islandicum (strain DSM

Query: 4 GAPRRFR 10
G PRRFR
Sbjct: 21 GKPRRFR 27


>sp|RL1_PYRNV|LARGE ribosomal subunit protein uL1|Pyrobaculum neutrophilum (strain

Query: 4 GAPRRFR 10
G PRRFR
Sbjct: 21 GKPRRFR 27


>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GAPRRF 9
GAPRR+
Sbjct: 456 GAPRRY 461




12|Sequence|56|65|PRRFRRSVPR

>sp|CBIX_SACS2|SIROHYDROCHLORIN cobaltochelatase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 FRRSVPR 10
FRR +PR
Sbjct: 74 FRRDIPR 80


>sp|RL1_PYRAR|LARGE ribosomal subunit protein uL1|Pyrobaculum arsenaticum (strain DSM

Query: 1 PRRFRRSV 8
PRRFR+SV
Sbjct: 23 PRRFRQSV 30


>sp|RL1_PYRNV|LARGE ribosomal subunit protein uL1|Pyrobaculum neutrophilum (strain

Query: 1 PRRFRRSV 8
PRRFR+SV
Sbjct: 23 PRRFRQSV 30


>sp|RL1_PYRIL|LARGE ribosomal subunit protein uL1|Pyrobaculum islandicum (strain DSM

Query: 1 PRRFRRSV 8
PRRFR+SV
Sbjct: 23 PRRFRQSV 30


>sp|Y092_METAC|UPF0147 protein MA_0092|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PRRFRRSV 8
PR RRSV
Sbjct: 34 PRNIRRSV 41


>sp|MUTL_METLZ|DNA mismatch repair protein MutL|Methanocorpusculum labreanum (strain

Query: 2 RRFRRSVP 9
R+F++SVP
Sbjct: 162 RKFQKSVP 169


>sp|Y1385_METMA|UPF0147 protein MM_1385|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PRRFRRSV 8
PR RRSV
Sbjct: 30 PRNIRRSV 37




13|Sequence|61|70|RSVPRGEAAG

>sp|UREG_NATPD|UREASE accessory protein UreG|Natronomonas pharaonis (strain ATCC 35678

Query: 1 RSVPRGEAAG 10
R VPR +AAG
Sbjct: 25 RLVPRLDAAG 34


>sp|MCH_METHJ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 SVPRGEAAG 10
SVP G AAG
Sbjct: 41 SVPGGYAAG 49


>sp|SUCC1_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit beta|Archaeoglobus fulgidus (strain

Query: 3 VPRGEAA 9
VPRGE A
Sbjct: 19 VPRGEVA 25


>sp|FEN_AERPE|FLAP endonuclease 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 SVPRGE 7
SVPRGE
Sbjct: 269 SVPRGE 274


>sp|ACDB_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit beta|Archaeoglobus fulgidus

Query: 1 RSVPRGE 7
R+VP+GE
Sbjct: 255 RAVPKGE 261




14|Sequence|66|75|GEAAGAVQEL

>sp|HPPA2_METAC|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Methanosarcina acetivorans

Query: 2 EAAGAVQE 9
E AGA+QE
Sbjct: 38 EIAGAIQE 45


>sp|DNLI_METHJ|DNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GEAAGAVQEL 10
G+A AV+EL
Sbjct: 88 GDAGAAVEEL 97




15|Sequence|71|80|AVQELARALA

>sp|HELS_CALMQ|ATP-DEPENDENT DNA helicase Hel308|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 AVQELARALA 10
A+QELAR L
Sbjct: 635 ALQELARTLG 644


>sp|TPIS_CENSM|TRIOSEPHOSPHATE isomerase|Cenarchaeum symbiosum

Query: 1 AVQELARALA 10
A+ ELARA++
Sbjct: 212 AIGELARAMS 221




16|Sequence|76|85|ARALAHLLEA

>sp|HIS8_METPE|HISTIDINOL-PHOSPHATE aminotransferase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 RALAHLLE 9
R LAH+LE
Sbjct: 266 RTLAHMLE 273


>sp|GLCDH_THETK|GLUCOSE 1-dehydrogenase|Thermoproteus tenax (strain ATCC 35583

Query: 2 RALAHLLEA 10
RALAHL EA
Sbjct: 299 RALAHLKEA 307


>sp|KPRS_METTH|RIBOSE-PHOSPHATE pyrophosphokinase|Methanothermobacter thermautotrophicus (strain

Query: 1 ARALAHLLEA 10
A+ +AHLLEA
Sbjct: 104 AKIVAHLLEA 113


>sp|PAN_METPE|PROTEASOME-ACTIVATING nucleotidase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 ARALAHLLEA 10
ARA+AH EA
Sbjct: 204 ARAVAHQTEA 213




17|Sequence|81|90|HLLEAERQER

>sp|EF1A_METB6|ELONGATION factor 1-alpha|Methanoregula boonei (strain DSM 21154

Query: 1 HLLEAERQE 9
H++EA R+E
Sbjct: 37 HIIEAYRKE 45




18|Sequence|86|95|ERQERARAEA

>sp|CETZ_METTP|TUBULIN-LIKE protein CetZ|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 ERQERARAE 9
ER++RAR+E
Sbjct: 344 ERKDRARSE 352


>sp|SRP54_HALLT|SIGNAL recognition particle 54 kDa|Halorubrum lacusprofundi (strain ATCC

Query: 1 ERQERARAEA 10
ER ERA AEA
Sbjct: 299 ERVERAMAEA 308


>sp|HEM1_PYRAE|GLUTAMYL-TRNA reductase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 RQERARAEA 10
+QE ARAEA
Sbjct: 294 KQEAARAEA 302




19|Sequence|91|100|ARAEAQEAED

***** No hits found ******


20|Sequence|96|105|QEAEDQQARV

***** No hits found ******


21|Sequence|101|110|QQARVLAQLL

>sp|NROR_PYRFU|NAD(P)H:RUBREDOXIN oxidoreductase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 QQARVLAQLL 10
+QARVLA +L
Sbjct: 277 EQARVLADIL 286


>sp|DNLI2_HALWD|DNA ligase 2|Haloquadratum walsbyi (strain DSM 16790

Query: 2 QARVLAQLL 10
+ARVLA+L+
Sbjct: 160 EARVLARLI 168


>sp|ARTA_NATPD|ARCHAEOSORTASE A|Natronomonas pharaonis (strain ATCC 35678

Query: 4 RVLAQLL 10
RVLAQLL
Sbjct: 259 RVLAQLL 265




22|Sequence|106|115|LAQLLRVWGA

>sp|SYL2_SULAC|LEUCINE--TRNA ligase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LAQLLRVW 8
L+Q+L++W
Sbjct: 749 LSQILQIW 756


>sp|PURT_SACS2|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Saccharolobus

Query: 1 LAQLLRVWG 9
LAQ VWG
Sbjct: 331 LAQTENVWG 339


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 2 AQLLRVWGA 10
+++LRV+GA
Sbjct: 62 SEILRVYGA 70




23|Sequence|111|120|RVWGAPRNSD

>sp|PGK2_THEKO|2-PHOSPHOGLYCERATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 RVWGAPRNSD 10
RV AP+NSD
Sbjct: 150 RVVKAPKNSD 159


>sp|FLAB2_THEKO|FLAGELLIN B2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 WGAPRNSD 10
WG P+N D
Sbjct: 274 WGVPQNLD 281


>sp|SYS_STAMF|SERINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 RVWGAPR 7
R WG PR
Sbjct: 125 RFWGKPR 131


>sp|TIAS_THEGJ|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Thermococcus gammatolerans

Query: 3 WGAPRNSD 10
WG PR D
Sbjct: 170 WGTPRKVD 177


>sp|TIAS_METMA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanosarcina mazei (strain

Query: 3 WGAPRNSD 10
WG PR D
Sbjct: 174 WGTPREVD 181


>sp|RS4E_METHJ|SMALL ribosomal subunit protein eS4|Methanospirillum hungatei JF-1

Query: 1 RVWGAPRNSD 10
+ WG PR +D
Sbjct: 12 KSWGIPRKTD 21


>sp|TIAS_METAC|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanosarcina acetivorans

Query: 3 WGAPRN 8
WG+PR+
Sbjct: 174 WGSPRD 179


>sp|SRP54_SULTO|SIGNAL recognition particle 54 kDa|Sulfurisphaera tokodaii (strain DSM

Query: 2 VWGAPRNSD 10
V+G P N+D
Sbjct: 153 VYGEPNNTD 161


>sp|TIAS_HYPBU|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Hyperthermus butylicus (strain

Query: 1 RVWGAPRNSD 10
R+W PR D
Sbjct: 195 RMWSEPRRID 204


>sp|SYS_HYPBU|SERINE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 1 RVWGAPR 7
R WG PR
Sbjct: 126 RFWGRPR 132


>sp|QOXM_SULAC|QUINOL oxidase subunit 1/3|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 RVWGAP 6
R+WG P
Sbjct: 211 RLWGTP 216


>sp|Y875_PYRAB|UPF0310 protein PYRAB08750|Pyrococcus abyssi (strain GE5 /

Query: 2 VWGAPRNSD 10
VWG PR +
Sbjct: 21 VWGVPRRHE 29


>sp|FLPA_HALWD|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Haloquadratum walsbyi (strain

Query: 2 VWGAPRNSD 10
V+G PR++D
Sbjct: 29 VYGEPRDTD 37


>sp|AATB_IGNH4|A-TYPE ATP synthase subunit B|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 VWGAPRN 8
VWG P N
Sbjct: 117 VWGEPIN 123


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 RVWGAP 6
RVWG P
Sbjct: 462 RVWGTP 467


>sp|RS4E_NANEQ|SMALL ribosomal subunit protein eS4|Nanoarchaeum equitans (strain

Query: 1 RVWGAPRNS 9
R W PR S
Sbjct: 16 RTWPVPRKS 24


>sp|Y1033_PYRHO|UPF0310 protein PH1033|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 VWGAPR 7
VWG P+
Sbjct: 21 VWGVPK 26




24|Sequence|116|125|PRNSDPALGL

>sp|PGK2_THEKO|2-PHOSPHOGLYCERATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PRNSDPAL 8
P+NSDP +
Sbjct: 155 PKNSDPLI 162


>sp|NURA_PYRFU|DNA double-strand break repair nuclease|Pyrococcus furiosus (strain

Query: 2 RNSDPAL 8
RN DPAL
Sbjct: 433 RNRDPAL 439


>sp|HEM1_CALMQ|GLUTAMYL-TRNA reductase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PRNSDPAL 8
PRN DP +
Sbjct: 268 PRNVDPEI 275


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PRNSDPALG 9
P N +PA+G
Sbjct: 429 PTNDEPAVG 437


>sp|CFBD_METAC|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanosarcina acetivorans

Query: 3 NSDPALGL 10
N DP LGL
Sbjct: 239 NIDPELGL 246


>sp|SYK_METBF|LYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 RNSDPALG 9
R +DP+LG
Sbjct: 335 RENDPSLG 342


>sp|MRE11_THEAC|DNA double-strand break repair protein|Thermoplasma acidophilum

Query: 2 RNSDPALGL 10
RN +PA G+
Sbjct: 87 RNGEPAAGI 95


>sp|CFBD_METBF|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanosarcina barkeri

Query: 3 NSDPALGL 10
N DP LGL
Sbjct: 239 NIDPELGL 246


>sp|SYK_METBA|LYSINE--TRNA ligase|Methanosarcina barkeri

Query: 2 RNSDPALG 9
R +DP+LG
Sbjct: 335 RENDPSLG 342


>sp|SYK1_METAC|LYSINE--TRNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 RNSDPALG 9
R +DP+LG
Sbjct: 331 RENDPSLG 338


>sp|TRPE2_HALSA|ANTHRANILATE synthase component 1 2|Halobacterium salinarum (strain ATCC 700922

Query: 2 RNSDPALG 9
R+ DPA+G
Sbjct: 187 RDGDPAVG 194




25|Sequence|121|130|PALGLDDDPD

>sp|SYW_METKA|TRYPTOPHAN--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 ALGLDDDPD 10
ALGLD DPD
Sbjct: 131 ALGLDLDPD 139


>sp|Y1546_ARCFU|UNCHARACTERIZED MscS family protein AF_1546|Archaeoglobus fulgidus (strain ATCC

Query: 1 PALGLD 6
PALGLD
Sbjct: 76 PALGLD 81


>sp|Y011_PYRAR|PROTEIN Pars_0011|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PALGLDDDP 9
P LDDDP
Sbjct: 112 PLTLLDDDP 120


>sp|Y037_THEVO|UPF0215 protein TV0037|Thermoplasma volcanium (strain ATCC 51530

Query: 3 LGLDDDP 9
LG+DD P
Sbjct: 24 LGVDDSP 30


>sp|FLAE_METVO|PUTATIVE flagella-related protein E|Methanococcus voltae

Query: 2 ALGLDDD 8
+GLDDD
Sbjct: 75 GIGLDDD 81


>sp|Y905_PICTO|UPF0215 protein PTO0905|Picrophilus torridus (strain ATCC 700027

Query: 3 LGLDDDP 9
LG+DD P
Sbjct: 8 LGIDDGP 14


>sp|RFCL_METKA|REPLICATION factor C large subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 LDDDPD 10
LD+DPD
Sbjct: 268 LDEDPD 273


>sp|WECC_METVS|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PALGLDD 7
PA+G DD
Sbjct: 92 PAIGCDD 98


>sp|ATGT_THEVO|TRNA-GUANINE(15) transglycosylase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 GLDDDPD 10
GL+ DPD
Sbjct: 444 GLEPDPD 450


>sp|PMDHL_METTH|PHOSPHOMEVALONATE dehydratase large subunit|Methanothermobacter thermautotrophicus

Query: 6 DDDPD 10
DDDPD
Sbjct: 288 DDDPD 292


>sp|YR33_THEPE|UNCHARACTERIZED 33.4 kDa protein in|Thermofilum pendens

Query: 1 PALGLDDDPD 10
P L ++DD D
Sbjct: 230 PVLAVEDDVD 239




26|Sequence|126|135|DDDPDAPAAQ

>sp|Y1269_PYRHO|UPF0098 protein PH1269|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DDPDAP 7
DDPDAP
Sbjct: 90 DDPDAP 95


>sp|Y1153_PYRAB|UPF0098 protein PYRAB11530|Pyrococcus abyssi (strain GE5 /

Query: 2 DDPDAP 7
DDPDAP
Sbjct: 70 DDPDAP 75


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 DDDPDAPAAQ 10
+DDPDA AQ
Sbjct: 49 EDDPDAVVAQ 58


>sp|Y547_METJA|UNCHARACTERIZED ATP-binding protein MJ0547|Methanocaldococcus jannaschii (strain

Query: 4 PDAPAAQ 10
PD+PAAQ
Sbjct: 221 PDSPAAQ 227


>sp|Y1698_ARCFU|UPF0098 protein AF_1698|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DDPDAP 7
+DPDAP
Sbjct: 183 EDPDAP 188


>sp|HBCL2_METS5|4-HYDROXYBUTYRATE--COA ligase 2|Metallosphaera sedula (strain ATCC 51363

Query: 2 DDPDAPAA 9
+DPD P+A
Sbjct: 148 EDPDNPSA 155


>sp|FOLD_HALWD|BIFUNCTIONAL protein FolD|Haloquadratum walsbyi (strain DSM 16790

Query: 3 DPDAPAAQ 10
DP+APAA+
Sbjct: 85 DPEAPAAE 92


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 3 DPDAPA 8
DPDAP+
Sbjct: 251 DPDAPS 256


>sp|SYL_PYRIL|LEUCINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 DDPDAP 7
DDP AP
Sbjct: 920 DDPSAP 925




27|Sequence|131|140|APAAQLARAL

***** No hits found ******


28|Sequence|136|145|LARALLRARL

***** No hits found ******


29|Sequence|141|150|LRARLDPAAL

>sp|EF1A_METS3|ELONGATION factor 1-alpha|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 LRARLDPA 8
L A+LDPA
Sbjct: 343 LTAKLDPA 350


>sp|Y3270_HALS3|UNCHARACTERIZED solute-binding protein OE_3270R|Halobacterium salinarum (strain

Query: 1 LRARLDPAAL 10
LRA LDPA +
Sbjct: 176 LRADLDPATV 185


>sp|Y1595_HALSA|UNCHARACTERIZED solute-binding protein VNG_1595C|Halobacterium salinarum (strain

Query: 1 LRARLDPAAL 10
LRA LDPA +
Sbjct: 176 LRADLDPATV 185


>sp|HMGCS_SULTO|HYDROXYMETHYLGLUTARYL-COA synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LRARLDPAAL 10
+RA++DP+ +
Sbjct: 63 MRAKIDPSEI 72


>sp|HMD_METKA|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanopyrus kandleri (strain AV19 /

Query: 1 LRARLDPAAL 10
L LDPAAL
Sbjct: 316 LEEALDPAAL 325




30|Sequence|146|155|DPAALAAQLV

>sp|TF2B_PYRIL|TRANSCRIPTION initiation factor IIB|Pyrobaculum islandicum (strain DSM 4184

Query: 1 DPAALAAQLV 10
DPA LAA V
Sbjct: 279 DPAGLAAAAV 288


>sp|TF2B_CALMQ|TRANSCRIPTION initiation factor IIB|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 DPAALAAQLV 10
DPA LAA V
Sbjct: 282 DPAGLAAAAV 291


>sp|TF2B_PYRNV|TRANSCRIPTION initiation factor IIB|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 DPAALAAQLV 10
DPA LAA V
Sbjct: 279 DPAGLAAAAV 288


>sp|TF2B_PYRAR|TRANSCRIPTION initiation factor IIB|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 DPAALAAQLV 10
DPA LAA V
Sbjct: 279 DPAGLAAAAV 288


>sp|RPIA_METAC|RIBOSE-5-PHOSPHATE isomerase A|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DPAALAAQL 9
DP ALA QL
Sbjct: 192 DPEALALQL 200


>sp|TF2B_PYRAE|TRANSCRIPTION initiation factor IIB|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DPAALAAQLV 10
DPA LAA V
Sbjct: 279 DPAGLAAAAV 288


>sp|RPIA_METMA|RIBOSE-5-PHOSPHATE isomerase A|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 DPAALAAQL 9
DP ALA QL
Sbjct: 192 DPEALALQL 200




31|Sequence|151|160|AAQLVPAPVP

>sp|RSMA_METBF|PROBABLE ribosomal RNA small subunit|Methanosarcina barkeri (strain Fusaro /

Query: 3 QLVPAPVP 10
+LVP PVP
Sbjct: 195 KLVPRPVP 202




32|Sequence|156|165|PAPVPAAALR

>sp|CCA_HALSA|CCA-ADDING enzyme|Halobacterium salinarum (strain ATCC 700922

Query: 1 PAPVPAAALR 10
PAP+ AAALR
Sbjct: 268 PAPLDAAALR 277


>sp|CCA_HALS3|CCA-ADDING enzyme|Halobacterium salinarum (strain ATCC 29341

Query: 1 PAPVPAAALR 10
PAP+ AAALR
Sbjct: 268 PAPLDAAALR 277


>sp|Y2319_HALLT|UPF0179 protein Hlac_2319|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PAPVPAAAL 9
PAPVPA L
Sbjct: 73 PAPVPANVL 81


>sp|RL1_METST|LARGE ribosomal subunit protein uL1|Methanosphaera stadtmanae (strain

Query: 1 PAPVPAAA 8
P P+PA+A
Sbjct: 130 PKPIPASA 137


>sp|AATA_PYRAR|A-TYPE ATP synthase subunit A|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 APVPAAALR 10
A VPA+ALR
Sbjct: 542 AGVPASALR 550


>sp|RL1_METJA|LARGE ribosomal subunit protein uL1|Methanocaldococcus jannaschii (strain

Query: 1 PAPVPAAA 8
P PVPA A
Sbjct: 130 PKPVPANA 137




33|Sequence|161|170|AAALRPRPPV

>sp|SYFA_SULTO|PHENYLALANINE--TRNA ligase alpha subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 ALRPRPPV 10
A RP+PP+
Sbjct: 317 ASRPKPPI 324


>sp|HOSA_SACS2|HOMOCITRATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI7|HOMOCITRATE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI6|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI4|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI3|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI2|HOMOCITRATE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|HOSA_SACI1|HOMOCITRATE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 377 LKPRPP 382


>sp|DCDA_THEAC|DIAMINOPIMELATE decarboxylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 RPRPP 9
RPRPP
Sbjct: 371 RPRPP 375


>sp|HOSA_SULAC|HOMOCITRATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 LRPRPP 9
L+PRPP
Sbjct: 384 LKPRPP 389


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 1 AAALRPRPPV 10
AAA + +PPV
Sbjct: 620 AAARKMKPPV 629


>sp|THIL_METKA|THIAMINE-MONOPHOSPHATE kinase|Methanopyrus kandleri (strain AV19 /

Query: 5 RPRPPV 10
RPRPPV
Sbjct: 193 RPRPPV 198


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 2 AALRPRPP 9
AA+RP PP
Sbjct: 437 AAIRPDPP 444


>sp|SYT_METTH|THREONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 ALRPRPP 9
++RP+PP
Sbjct: 137 SIRPQPP 143


>sp|RNP2_METMJ|RIBONUCLEASE P protein component 2|Methanoculleus marisnigri (strain ATCC

Query: 4 LRPRPP 9
+RPRPP
Sbjct: 1 MRPRPP 6


>sp|ACDD_METKA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanopyrus kandleri

Query: 5 RPRPPV 10
RP PPV
Sbjct: 119 RPNPPV 124


>sp|KHSE_METKA|HOMOSERINE kinase|Methanopyrus kandleri (strain AV19 /

Query: 3 ALRPRPP 9
ALR RPP
Sbjct: 182 ALRERPP 188




34|Sequence|166|175|PRPPVYDDGP

>sp|RGYR_METJA|REVERSE gyrase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PRPPVYDDG 9
P+ P+YD+G
Sbjct: 1508 PKVPLYDEG 1516


>sp|CCA_PYRAE|CCA-ADDING enzyme|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 PPVYDDG 9
PPVYDD
Sbjct: 347 PPVYDDA 353


>sp|RFRNP_META3|RNA-FREE ribonuclease P|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PRPPVYDD 8
P P VYD+
Sbjct: 52 PYPSVYDE 59


>sp|KDGA_SACS2|2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6-PHOSPHOGALACTONATE aldolase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PRPPVY 6
PRPP++
Sbjct: 274 PRPPIF 279


>sp|Y1292_METJA|UNCHARACTERIZED protein MJ1292|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PRPPVYD 7
P PP YD
Sbjct: 145 PYPPFYD 151


Query: 1 PRPPVY 6
P PPVY
Sbjct: 496 PTPPVY 501


>sp|KDGA_SACSO|2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6-PHOSPHOGALACTONATE aldolase|Saccharolobus solfataricus (Sulfolobus solfataricus)

Query: 1 PRPPVY 6
PRPP++
Sbjct: 260 PRPPIF 265


>sp|KDGA_SULAC|2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6-PHOSPHOGALACTONATE aldolase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PRPPVY 6
PRPP++
Sbjct: 257 PRPPIF 262


>sp|PRIL_METTH|DNA primase large subunit PriL|Methanothermobacter thermautotrophicus

Query: 3 PPVYDDGP 10
PP+++D P
Sbjct: 351 PPLFEDDP 358


>sp|SPSS_METBF|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 RPPVYD 7
+PP+YD
Sbjct: 63 KPPIYD 68


>sp|CAPPA_SULAC|PHOSPHOENOLPYRUVATE carboxylase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PRPPVYD 7
P PPV++
Sbjct: 123 PNPPVFE 129


>sp|AATI_HALSA|A-TYPE ATP synthase subunit I|Halobacterium salinarum (strain ATCC 700922

Query: 3 PPVYDDGP 10
PPV D P
Sbjct: 343 PPVIQDNP 350


>sp|PRIL_THEKO|DNA primase large subunit PriL|Thermococcus kodakarensis (strain ATCC

Query: 2 RPPVYDDGP 10
+PP+++D P
Sbjct: 314 KPPLFEDQP 322


>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 3 PPVYDDGP 10
PP YDD P
Sbjct: 166 PPTYDDIP 173


>sp|SYP_NATPD|PROLINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PPVYD 7
PPVYD
Sbjct: 459 PPVYD 463


>sp|PRIL_PYRFU|DNA primase large subunit PriL|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PPVYDDGP 10
PP+++D P
Sbjct: 299 PPLFEDQP 306




35|Sequence|171|180|YDDGPAGPDA

>sp|SYS_SACS2|SERINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI7|SERINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI6|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI4|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI3|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI2|SERINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|SYS_SACI1|SERINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 DDGPAGPD 9
DD P GPD
Sbjct: 110 DDVPNGPD 117


>sp|RPO2_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Sulfolobus acidocaldarius (strain ATCC

Query: 1 YDDGPAGPDA 10
Y+D PAG +A
Sbjct: 711 YNDRPAGANA 720


>sp|DNAG_SULTO|DNA primase DnaG|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DDGPAGPD 9
D PAGPD
Sbjct: 153 DRLPAGPD 160


>sp|DNAG_SULAC|DNA primase DnaG|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACS2|DNA primase DnaG|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 PAGPD 9
PAGPD
Sbjct: 160 PAGPD 164


>sp|DNAG_SACI7|DNA primase DnaG|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACI6|DNA primase DnaG|Saccharolobus islandicus (strain M.16.4 /

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACI4|DNA primase DnaG|Saccharolobus islandicus (strain M.14.25 /

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACI3|DNA primase DnaG|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACI2|DNA primase DnaG|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_SACI1|DNA primase DnaG|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|DNAG_PYRIL|DNA primase DnaG|Pyrobaculum islandicum (strain DSM 4184

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167


>sp|DNAG_METS5|DNA primase DnaG|Metallosphaera sedula (strain ATCC 51363

Query: 5 PAGPD 9
PAGPD
Sbjct: 159 PAGPD 163


>sp|DNAG_DESA1|DNA primase DnaG|Desulfurococcus amylolyticus (strain DSM 18924

Query: 5 PAGPD 9
PAGPD
Sbjct: 157 PAGPD 161


>sp|DNAG_PYRNV|DNA primase DnaG|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167


>sp|Y945_METJA|UNCHARACTERIZED protein MJ0945|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YDDGPAGPD 9
YD PAG D
Sbjct: 161 YDAAPAGTD 169


>sp|DNAG_PYRAE|DNA primase DnaG|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167


>sp|SYS_SULTO|SERINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DDGPAGPD 9
D P GPD
Sbjct: 110 DSAPIGPD 117


>sp|DNAG_PYRCJ|DNA primase DnaG|Pyrobaculum calidifontis (strain DSM 21063

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167


>sp|DNAG_PYRAR|DNA primase DnaG|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167


>sp|DNAG_HYPBU|DNA primase DnaG|Hyperthermus butylicus (strain DSM 5456

Query: 5 PAGPD 9
PAGPD
Sbjct: 156 PAGPD 160


>sp|SYS_SULAC|SERINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 YDDGPAGPD 9
+D P GPD
Sbjct: 109 HDSVPIGPD 117


>sp|RPO2C_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 YDDGPAG 7
YDD PAG
Sbjct: 200 YDDRPAG 206


>sp|RPO2C_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 YDDGPAG 7
YDD PAG
Sbjct: 200 YDDRPAG 206


>sp|PURL_NATPD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Natronomonas pharaonis (strain ATCC 35678

Query: 1 YDDGPAGP 8
Y+D P+GP
Sbjct: 522 YNDSPSGP 529


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 5 PAGPD 9
PAGPD
Sbjct: 163 PAGPD 167




36|Sequence|176|185|AGPDAEEAGD

>sp|SYC_HALSA|CYSTEINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GPDAEEA 8
GPDAE+A
Sbjct: 169 GPDAEQA 175


>sp|NUCS2_HALSA|ENDONUCLEASE NucS 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 AGPDAEEAG 9
A PDA EAG
Sbjct: 139 ANPDALEAG 147


>sp|MPTE_PYRFU|6-HYDROXYMETHYL-7,8-DIHYDROPTERIN pyrophosphokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 AGPDAEEA 8
AGP+ EEA
Sbjct: 60 AGPNLEEA 67




37|Sequence|181|190|EEAGDETPDV

>sp|COXX_HALMA|PROTOHEME IX farnesyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 1 EEAGDETPD 9
E AGD+TPD
Sbjct: 159 EPAGDDTPD 167


>sp|QUEC_METHJ|7-CYANO-7-DEAZAGUANINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 EEAGDETPD 9
E+AGD PD
Sbjct: 85 EDAGDGIPD 93


>sp|RFCL_METJA|REPLICATION factor C large subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 5 DETPDV 10
DETPDV
Sbjct: 252 DETPDV 257


>sp|IPYR_AERPE|INORGANIC pyrophosphatase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GDETPDV 10
GDE PDV
Sbjct: 10 GDEAPDV 16


>sp|CARB_THEAC|CARBAMOYL phosphate synthase large chain|Thermoplasma acidophilum (strain

Query: 2 EAGDETPDV 10
E DETPD+
Sbjct: 534 EDEDETPDL 542


>sp|TRUB_HALMA|PROBABLE tRNA pseudouridine synthase B|Haloarcula marismortui (strain ATCC

Query: 2 EAGDETPDV 10
E GD TP++
Sbjct: 268 EVGDATPEI 276




38|Sequence|186|195|ETPDVDPELL

>sp|RS3_METVS|SMALL ribosomal subunit protein uS3|Methanococcus vannielii (strain

Query: 1 ETPDVDPELL 10
ETPD+DP ++
Sbjct: 85 ETPDLDPAIV 94


>sp|Y1511_METMJ|UPF0316 protein Memar_1511|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 PDVDPELL 10
PD+DPE
Sbjct: 6 PDIDPEFF 13


>sp|RS3_METM6|SMALL ribosomal subunit protein uS3|Methanococcus maripaludis (strain

Query: 1 ETPDVDPELL 10
E+PD+DP ++
Sbjct: 85 ESPDLDPAIV 94


>sp|RS3_METM7|SMALL ribosomal subunit protein uS3|Methanococcus maripaludis (strain

Query: 1 ETPDVDPELL 10
E+PD+DP ++
Sbjct: 85 ESPDLDPAIV 94


>sp|SYG_PYRHO|GLYCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 65 ETPDITPE 72


>sp|SYG_PYRAB|GLYCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 65 ETPDITPE 72


>sp|SYG_THESM|GLYCINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 65 ETPDITPE 72


>sp|SYG_PYRFU|GLYCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 63 ETPDITPE 70


>sp|SYG_THEGJ|GLYCINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 65 ETPDITPE 72


>sp|RS3_METM5|SMALL ribosomal subunit protein uS3|Methanococcus maripaludis (strain

Query: 1 ETPDVDPELL 10
E PD+DP ++
Sbjct: 85 ENPDLDPAIV 94


>sp|SYG_THEKO|GLYCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 ETPDVDPE 8
ETPD+ PE
Sbjct: 65 ETPDITPE 72


>sp|SYP_METKA|PROLINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 ETPDVDPELL 10
E PDV PELL
Sbjct: 385 ELPDVVPELL 394


>sp|RS3_METMP|SMALL ribosomal subunit protein uS3|Methanococcus maripaludis (strain

Query: 1 ETPDVDPELL 10
E PD+DP ++
Sbjct: 85 ENPDLDPAVV 94


>sp|HPRT_METHJ|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanospirillum hungatei JF-1 (strain

Query: 3 PDVDPELL 10
PD+DP LL
Sbjct: 32 PDIDPGLL 39


>sp|RSMA_METKA|PROBABLE ribosomal RNA small subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 ETPDVDPELL 10
E PDVDP+ L
Sbjct: 200 ERPDVDPDTL 209


>sp|HPRT_METEZ|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanohalobium evestigatum (strain

Query: 3 PDVDPELL 10
P V+PELL
Sbjct: 32 PSVEPELL 39


>sp|RS3_PICTO|SMALL ribosomal subunit protein uS3|Picrophilus torridus (strain ATCC

Query: 2 TPDVDPEL 9
TPD++P++
Sbjct: 86 TPDLNPQI 93


>sp|RS3A_METS3|SMALL ribosomal subunit protein eS1|Methanobrevibacter smithii (strain

Query: 1 ETPDVDPELL 10
ETP DP+ L
Sbjct: 35 ETPARDPDYL 44


>sp|ARGB_METMJ|ACETYLGLUTAMATE kinase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 ETPDVDPELL 10
E +VDPE+L
Sbjct: 152 EIEEVDPEVL 161


>sp|CBIA_THEAC|COBYRINATE a,c-diamide synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 ETPDVDPELL 10
E PD D +L+
Sbjct: 280 EVPDADSDLI 289


>sp|IDI2_THEAC|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 DVDPELL 10
D DPE+L
Sbjct: 298 DTDPEML 304


>sp|EF1B_METPE|ELONGATION factor 1-beta|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 ETPDVDPELL 10
E+PDVD E L
Sbjct: 13 ESPDVDLEAL 22


>sp|MRE11_METAC|DNA double-strand break repair protein|Methanosarcina acetivorans

Query: 1 ETPDVDPE 8
E PDV+PE
Sbjct: 500 EAPDVNPE 507


>sp|TIAS_PYRNV|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Pyrobaculum neutrophilum

Query: 3 PDVDPEL 9
PDVDP +
Sbjct: 396 PDVDPTI 402


>sp|EF1B_METS3|ELONGATION factor 1-beta|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 ETPDVDPELL 10
E+PDVD E L
Sbjct: 13 ESPDVDLEAL 22


>sp|Y582_METMA|UNCHARACTERIZED glycosyltransferase MM_0582|Methanosarcina mazei (strain ATCC

Query: 3 PDVDPE 8
P++DPE
Sbjct: 245 PEIDPE 250


>sp|EF1B_METTH|ELONGATION factor 1-beta|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 ETPDVDPELL 10
E+PDVD E L
Sbjct: 13 ESPDVDLEAL 22


>sp|KAE1_METBU|TRNA N6-adenosine threonylcarbamoyltransferase|Methanococcoides burtonii

Query: 1 ETPDVDPELL 10
+TP VDP +L
Sbjct: 122 KTPAVDPVVL 131


>sp|DCDA_ARCFU|DIAMINOPIMELATE decarboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PDVDPE 8
PDVDP+
Sbjct: 147 PDVDPK 152


>sp|RL10_HALVD|LARGE ribosomal subunit protein uL10|Haloferax volcanii (strain ATCC

Query: 1 ETPDVDPELL 10
E+PD PEL+
Sbjct: 262 ESPDFMPELI 271


>sp|PSTB_PYRAB|PHOSPHATE import ATP-binding protein PstB|Pyrococcus abyssi (strain GE5 /

Query: 2 TPDVDP 7
+PDVDP
Sbjct: 76 SPDVDP 81


>sp|EF1B_METLZ|ELONGATION factor 1-beta|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 ETPDVDPELL 10
E+PDVD E L
Sbjct: 13 ESPDVDLEKL 22


>sp|RNH2_PYRNV|RIBONUCLEASE HII|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 ETPDVDPE 8
++PDVDP
Sbjct: 104 DSPDVDPR 111


>sp|DAPB_METLZ|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 TPDVDPELL 10
TP+ D ELL
Sbjct: 94 TPEQDAELL 102


>sp|HPRT_METPE|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanosphaerula palustris (strain ATCC

Query: 3 PDVDPELL 10
P V+PELL
Sbjct: 32 PIVEPELL 39


>sp|TRM1_METS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanobrevibacter smithii

Query: 2 TPDVDPE 8
TPD+ PE
Sbjct: 264 TPDICPE 270


>sp|ARLY_METM5|ARGININOSUCCINATE lyase|Methanococcus maripaludis (strain C5 /

Query: 1 ETPDVDPEL 9
ET D+DP L
Sbjct: 72 ETLDLDPSL 80




39|Sequence|191|200|DPELLRYLLG

>sp|SYM_METS3|METHIONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 DPELLRYLL 9
DP+LLRY L
Sbjct: 344 DPDLLRYYL 352


>sp|SYK_METBF|LYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PELLRYLL 9
PE+LRYL+
Sbjct: 296 PEVLRYLI 303


>sp|SYK_METBA|LYSINE--TRNA ligase|Methanosarcina barkeri

Query: 2 PELLRYLL 9
PE+LRYL+
Sbjct: 296 PEVLRYLI 303


>sp|SYFB_HALMA|PHENYLALANINE--TRNA ligase beta subunit|Haloarcula marismortui (strain ATCC 43049

Query: 1 DPELLRYLLG 10
DP+ LRYL G
Sbjct: 7 DPDELRYLTG 16


>sp|SYK1_METMA|LYSINE--TRNA ligase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PELLRYLL 9
PE+LRYL+
Sbjct: 296 PEVLRYLI 303


>sp|SYK1_METAC|LYSINE--TRNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PELLRYLL 9
PE+LRYL+
Sbjct: 292 PEVLRYLI 299


>sp|SYC_METM6|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 DPELLRYLL 9
DPE+LR+
Sbjct: 284 DPEILRFFF 292


>sp|SYC_METM7|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 DPELLRYLL 9
DPE+LR+
Sbjct: 284 DPEILRFFF 292


>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 1 DPELLRYL 8
DP++LRYL
Sbjct: 223 DPQVLRYL 230


>sp|RS5_HYPBU|SMALL ribosomal subunit protein uS5|Hyperthermus butylicus (strain DSM

Query: 1 DPELLRYLLG 10
+PE++ YL+G
Sbjct: 42 EPEIVDYLIG 51


>sp|MOBA_NATPD|PROBABLE molybdenum cofactor guanylyltransferase|Natronomonas pharaonis

Query: 1 DPELLRYLL 9
DPELL YL
Sbjct: 107 DPELLEYLF 115


>sp|SYM_METMA|METHIONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PELLRYLLG 10
P+LLRY L
Sbjct: 356 PDLLRYYLA 364


>sp|SYM_HALWD|METHIONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 PELLRYLLG 10
P+LLRY L
Sbjct: 399 PDLLRYYLA 407


>sp|GATB_SULTO|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Sulfurisphaera tokodaii (strain DSM

Query: 1 DPELLRYLLG 10
DP+++ YL+G
Sbjct: 438 DPKVINYLVG 447


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PELLRYLL 9
PE+LR+LL
Sbjct: 298 PEILRFLL 305


>sp|CMO_PYRFU|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase cofactor-modifying|Pyrococcus

Query: 2 PELLRYLLG 10
PEL RYLL
Sbjct: 165 PELARYLLN 173


>sp|RS3A_PICTO|SMALL ribosomal subunit protein eS1|Picrophilus torridus (strain ATCC

Query: 2 PELLRYLLG 10
PEL +Y++G
Sbjct: 155 PELAQYIIG 163


>sp|IF2P_METST|PROBABLE translation initiation factor IF-2|Methanosphaera stadtmanae

Query: 2 PELLRYLLG 10
PELL LLG
Sbjct: 206 PELLTMLLG 214


>sp|SYK_THEVO|LYSINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 PELLRYLLG 10
PELLR+L+
Sbjct: 287 PELLRFLIA 295


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PELLRYLLG 10
P+LLRY L
Sbjct: 352 PDLLRYYLA 360


>sp|SYM_METAC|METHIONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PELLRYLLG 10
P+LLRY L
Sbjct: 356 PDLLRYYLA 364


>sp|RS7_METB6|SMALL ribosomal subunit protein uS7|Methanoregula boonei (strain DSM

Query: 1 DPELLRYL 8
DP L+RY+
Sbjct: 35 DPSLVRYV 42


>sp|GATB_SULAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Sulfolobus acidocaldarius (strain ATCC

Query: 1 DPELLRYLLG 10
DP+++ YL+G
Sbjct: 438 DPKVINYLVG 447


>sp|SYM_HALSA|METHIONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 PELLRYLLG 10
P+LLRY L
Sbjct: 359 PDLLRYYLA 367


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 DPELLRYL 8
DPE++ YL
Sbjct: 378 DPEIIEYL 385


>sp|GATB_SACS2|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Saccharolobus solfataricus (strain ATCC

Query: 1 DPELLRYLLG 10
DP+++ YL+G
Sbjct: 437 DPKVVNYLVG 446


>sp|SYK_METMI|LYSINE--TRNA ligase|Methanococcus maripaludis (Methanococcus deltae)

Query: 2 PELLRYLL 9
PE+LR+L+
Sbjct: 298 PEVLRFLI 305


>sp|SYK_METMP|LYSINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 PELLRYLL 9
PE+LR+L+
Sbjct: 298 PEVLRFLI 305


>sp|HIS6_SULTO|IMIDAZOLE glycerol phosphate synthase subunit|Sulfurisphaera tokodaii (strain

Query: 2 PELLRYLL 9
PEL R+LL
Sbjct: 234 PELKRFLL 241


>sp|PYRE_PYRIL|OROTATE phosphoribosyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 DPELLRYLL 9
+PELLR+++
Sbjct: 36 EPELLRWVI 44


>sp|LONB_PYRAB|ARCHAEAL Lon protease|Pyrococcus abyssi (strain GE5 /

Query: 1 DPELLRYLLG 10
DP ++++L+G
Sbjct: 426 DPRIIKFLVG 435


>sp|SYY_PYRIL|TYROSINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 DPELLRYLLG 10
DP+ R++LG
Sbjct: 112 DPDATRFILG 121


>sp|SEPS_METAR|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 DPELLRYLLG 10
DP LRY+ G
Sbjct: 502 DPVALRYIQG 511


>sp|SYK_THEAC|LYSINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PELLRYLLG 10
P+LLRY++
Sbjct: 290 PDLLRYMIA 298


>sp|Y4020_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 DPELLR 6
DPELLR
Sbjct: 271 DPELLR 276


>sp|SYM_METAR|METHIONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 PELLRYLL 9
P+LLRY +
Sbjct: 357 PDLLRYYI 364


>sp|RS3A_THEVO|SMALL ribosomal subunit protein eS1|Thermoplasma volcanium (strain ATCC

Query: 3 ELLRYLLG 10
E +RYL+G
Sbjct: 157 EFVRYLIG 164


>sp|WTPA_PYRHO|MOLYBDATE/TUNGSTATE-BINDING protein WtpA|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 ELLRYLLG 10
E LR+LLG
Sbjct: 297 EFLRFLLG 304


>sp|SYY1_PYRAE|TYROSINE--TRNA ligase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DPELLRYLLG 10
DP+ R++LG
Sbjct: 112 DPDATRFVLG 121


>sp|SYY_PYRCJ|TYROSINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 DPELLRYLLG 10
DP+ R++LG
Sbjct: 112 DPDATRFVLG 121


>sp|SYC_IGNH4|CYSTEINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 DPELLRYLL 9
+PE++RY L
Sbjct: 282 EPEVVRYWL 290


>sp|Y939_METJA|UNCHARACTERIZED protein MJ0939|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DPELLRYLL 9
+ E+LRYLL
Sbjct: 219 EEEILRYLL 227


>sp|RS5_STAMF|SMALL ribosomal subunit protein uS5|Staphylothermus marinus (strain

Query: 1 DPELLRYLL 9
+PE++ YLL
Sbjct: 44 EPEIVDYLL 52


>sp|RL31_DESA1|LARGE ribosomal subunit protein eL31|Desulfurococcus amylolyticus

Query: 1 DPELLRYL 8
DPEL +Y+
Sbjct: 52 DPELNKYI 59


>sp|Y1127_METTP|PUTATIVE nickel insertion protein|Methanothrix thermoacetophila (strain DSM

Query: 2 PELLRYLLG 10
P LLR +LG
Sbjct: 225 PNLLRAILG 233


>sp|GATD_SULTO|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Sulfurisphaera tokodaii (strain DSM

Query: 1 DPELLRYLL 9
+PE++ YL+
Sbjct: 318 NPEIIEYLI 326


>sp|IF2P_METTH|PROBABLE translation initiation factor IF-2|Methanothermobacter

Query: 2 PELLRYLLG 10
PELL L+G
Sbjct: 206 PELLTMLMG 214


>sp|TYW3_SACS2|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 1 DPELLRYLLG 10
DP++L +LL
Sbjct: 25 DPDILGFLLA 34


>sp|MOAA_METAC|PROBABLE GTP 3',8-cyclase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DPELLRYLL 9
DP+L +Y++
Sbjct: 215 DPQLSKYMI 223


>sp|SYK_PICTO|LYSINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 PELLRYLLG 10
PE++R+L+
Sbjct: 287 PEIIRFLIA 295


>sp|KAE1_PYRNV|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrobaculum

Query: 2 PELLRYLLG 10
P +LR LLG
Sbjct: 53 PSILRQLLG 61




40|Sequence|196|205|RYLLGRILAG

>sp|AATB_METB6|A-TYPE ATP synthase subunit B|Methanoregula boonei (strain DSM 21154

Query: 1 RYLLGRILAG 10
R +LGRIL+G
Sbjct: 81 REMLGRILSG 90


>sp|AATB_NATPD|A-TYPE ATP synthase subunit B|Natronomonas pharaonis (strain ATCC 35678

Query: 3 LLGRILAG 10
LLGR+L+G
Sbjct: 84 LLGRVLSG 91


>sp|Y671_SACI1|UPF0282 protein YN1551_0671|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|Y2281_SACI2|UPF0282 protein LS215_2281|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|Y2245_SACI7|UPF0282 protein YG5714_2245|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|Y2198_SACI3|UPF0282 protein M1627_2198|Saccharolobus islandicus (strain M.16.27)

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|Y2122_SACI6|UPF0282 protein M164_2122|Saccharolobus islandicus (strain M.16.4 /

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|Y2116_SACI4|UPF0282 protein M1425_2116|Saccharolobus islandicus (strain M.14.25 /

Query: 2 YLLGRIL 8
YLLGR+L
Sbjct: 205 YLLGRVL 211


>sp|AATB_METBF|A-TYPE ATP synthase subunit B|Methanosarcina barkeri (strain Fusaro /

Query: 3 LLGRILAG 10
LLGRIL+G
Sbjct: 84 LLGRILSG 91


>sp|AATB_METBA|A-TYPE ATP synthase subunit B|Methanosarcina barkeri

Query: 3 LLGRILAG 10
LLGRIL+G
Sbjct: 84 LLGRILSG 91


>sp|AATB_METAC|A-TYPE ATP synthase subunit B|Methanosarcina acetivorans (strain ATCC

Query: 3 LLGRILAG 10
LLGRIL+G
Sbjct: 84 LLGRILSG 91


>sp|AATB_METPE|A-TYPE ATP synthase subunit B|Methanosphaerula palustris (strain ATCC

Query: 1 RYLLGRILAG 10
R +LGRIL+G
Sbjct: 81 RDMLGRILSG 90


>sp|AATB_METMA|A-TYPE ATP synthase subunit B|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 LLGRILAG 10
LLGRIL+G
Sbjct: 84 LLGRILSG 91


>sp|IF2P_THEPD|PROBABLE translation initiation factor IF-2|Thermofilum pendens (strain DSM

Query: 1 RYLLGRILA 9
RYL GR+LA
Sbjct: 225 RYLKGRLLA 233


>sp|AATB_METBU|A-TYPE ATP synthase subunit B|Methanococcoides burtonii (strain DSM 6242

Query: 3 LLGRILAG 10
+LGRIL+G
Sbjct: 84 MLGRILSG 91


>sp|AATB_METAR|A-TYPE ATP synthase subunit B|Methanocella arvoryzae (strain DSM 22066

Query: 3 LLGRILAG 10
+LGRIL+G
Sbjct: 83 MLGRILSG 90


>sp|AATB_METLZ|A-TYPE ATP synthase subunit B|Methanocorpusculum labreanum (strain ATCC

Query: 1 RYLLGRILAG 10
+ +LGRIL+G
Sbjct: 81 KTMLGRILSG 90


>sp|AATB1_METHJ|A-TYPE ATP synthase subunit B|Methanospirillum hungatei JF-1 (strain

Query: 3 LLGRILAG 10
+LGRIL+G
Sbjct: 83 MLGRILSG 90


>sp|AATB_METMJ|A-TYPE ATP synthase subunit B|Methanoculleus marisnigri (strain ATCC

Query: 3 LLGRILAG 10
+LGRIL+G
Sbjct: 83 MLGRILSG 90


>sp|AATB_ARCFU|A-TYPE ATP synthase subunit B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LLGRILAG 10
+LGRIL+G
Sbjct: 83 MLGRILSG 90


>sp|AATB_METKA|A-TYPE ATP synthase subunit B|Methanopyrus kandleri (strain AV19 /

Query: 3 LLGRILAG 10
LLGRIL G
Sbjct: 92 LLGRILNG 99


>sp|DNLI_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 RYLLGRIL 8
R+LLGR+
Sbjct: 48 RFLLGRVF 55


>sp|AATB_HALWD|A-TYPE ATP synthase subunit B|Haloquadratum walsbyi (strain DSM 16790

Query: 3 LLGRILAG 10
LLGR+L G
Sbjct: 83 LLGRVLDG 90


>sp|AATB_HALVD|A-TYPE ATP synthase subunit B|Haloferax volcanii (strain ATCC 29605

Query: 3 LLGRILAG 10
LLGR+L G
Sbjct: 83 LLGRVLDG 90


>sp|AATB_HALSA|A-TYPE ATP synthase subunit B|Halobacterium salinarum (strain ATCC

Query: 3 LLGRILAG 10
LLGR+L G
Sbjct: 83 LLGRVLDG 90


>sp|AATB_HALS3|A-TYPE ATP synthase subunit B|Halobacterium salinarum (strain ATCC 29341

Query: 3 LLGRILAG 10
LLGR+L G
Sbjct: 83 LLGRVLDG 90


>sp|AATB_HALLT|A-TYPE ATP synthase subunit B|Halorubrum lacusprofundi (strain ATCC

Query: 3 LLGRILAG 10
LLGR+L G
Sbjct: 83 LLGRVLDG 90


>sp|RS2_SACS2|SMALL ribosomal subunit protein uS2|Saccharolobus solfataricus (strain

Query: 1 RYLLGRILAG 10
R L+GRI+ G
Sbjct: 120 RALVGRIIPG 129


>sp|RNP2_METMJ|RIBONUCLEASE P protein component 2|Methanoculleus marisnigri (strain ATCC

Query: 1 RYLLGRIL 8
RY+L RIL
Sbjct: 13 RYILARIL 20




41|Sequence|201|210|RILAGSADSE

>sp|NDK_THEAC|NUCLEOSIDE diphosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 RILAGSAD 8
RILAGS D
Sbjct: 86 RILAGSTD 93


>sp|ILVD_METTH|DIHYDROXY-ACID dehydratase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 RILAGSADS 9
R LAGSAD+
Sbjct: 536 RKLAGSADT 544


>sp|F16PA_HALWD|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Haloquadratum walsbyi (strain DSM 16790

Query: 3 LAGSADSE 10
LAG ADSE
Sbjct: 306 LAGKADSE 313


>sp|MV3K_PICTO|MEVALONATE-3-KINASE torridus (strain ATCC 700027

Query: 2 ILAGSADS 9
IL+GS+DS
Sbjct: 107 ILSGSSDS 114


>sp|AATB_METAC|A-TYPE ATP synthase subunit B|Methanosarcina acetivorans (strain ATCC

Query: 1 RILAGSAD 8
RIL+GS D
Sbjct: 87 RILSGSGD 94




42|Sequence|206|215|SADSEGVAAP

>sp|TDXH_METTM|PEROXIREDOXIN marburgensis (strain ATCC BAA-927

Query: 3 DSEGVAAP 10
D+EGVAAP
Sbjct: 158 DAEGVAAP 165


>sp|TDXH_METTH|PEROXIREDOXIN thermautotrophicus (strain ATCC 29096

Query: 3 DSEGVAAP 10
D+EGVAAP
Sbjct: 158 DAEGVAAP 165


>sp|Y1873_ARCFU|UNCHARACTERIZED protein AF_1873|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SADSEGVAAP 10
++ S+G+AAP
Sbjct: 124 NSKSDGIAAP 133


>sp|TDXH_NANEQ|PEROXIREDOXIN equitans (strain Kin4-M)

Query: 1 SADSEGVAAP 10
+AD GVA P
Sbjct: 157 TADKYGVATP 166




43|Sequence|211|220|GVAAPRRLRR

>sp|DNLJ_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GVAAPRRLRR 10
GVA P +LRR
Sbjct: 448 GVACPAQLRR 457


>sp|COFC_METKA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 1 GVAAPRRLRR 10
GV+ PR LRR
Sbjct: 134 GVSFPRNLRR 143


>sp|Y4442_HALS3|UPF0200 protein OE_4442F|Halobacterium salinarum (strain ATCC 29341

Query: 2 VAAPRRLRR 10
V+APR LR+
Sbjct: 111 VSAPRELRK 119


>sp|Y2452_HALSA|UPF0200 protein VNG_2452C|Halobacterium salinarum (strain ATCC 700922

Query: 2 VAAPRRLRR 10
V+APR LR+
Sbjct: 111 VSAPRELRK 119


>sp|KAE1B_METJA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 GVAAPRRLR 9
GVAA RLR
Sbjct: 252 GVAANNRLR 260


>sp|KAE1_THESM|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus sibiricus

Query: 1 GVAAPRRLR 9
GVAA RLR
Sbjct: 253 GVAANNRLR 261


>sp|KAE1_PYRFU|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus furiosus

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1_THEON|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus onnurineus

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1_THEKO|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus kodakarensis

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1_THEGJ|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1_PYRHO|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus horikoshii

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1_PYRAB|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus abyssi (strain

Query: 1 GVAAPRRLRR 10
GVAA RLR
Sbjct: 253 GVAANNRLRE 262


>sp|KAE1B_METTH|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 GVAAPRRLR 9
GVA RRLR
Sbjct: 254 GVAVNRRLR 262




44|Sequence|216|225|RRLRRAADHD

>sp|Y708_METMA|UPF0284 protein MM_0708|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 RRLRRAADH 9
+RLR ADH
Sbjct: 137 KRLRNQADH 145


>sp|IORA_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorA|Archaeoglobus fulgidus (strain ATCC

Query: 3 LRRAADHD 10
LRRA +HD
Sbjct: 532 LRRALNHD 539


>sp|IF2P_AERPE|PROBABLE translation initiation factor IF-2|Aeropyrum pernix (strain ATCC

Query: 4 RRAADHD 10
RRAADH+
Sbjct: 596 RRAADHE 602


>sp|ENDA_HALSA|TRNA-SPLICING endonuclease|Halobacterium salinarum (strain ATCC 700922

Query: 5 RAADHD 10
RAADHD
Sbjct: 202 RAADHD 207


>sp|ENDA_HALS3|TRNA-SPLICING endonuclease|Halobacterium salinarum (strain ATCC 29341

Query: 5 RAADHD 10
RAADHD
Sbjct: 202 RAADHD 207




45|Sequence|221|230|AADHDVGSEL

>sp|ADEC_METTP|ADENINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 AADHDVGSEL 10
AA H +GSEL
Sbjct: 519 AASHSLGSEL 528


>sp|COBS_THEAC|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 DHDVGS 8
DHDVG+
Sbjct: 95 DHDVGA 100


>sp|FAEHP_METJA|BIFUNCTIONAL enzyme Fae/Hps|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 DHDVGSEL 10
D D+G EL
Sbjct: 374 DEDIGEEL 381


>sp|PAN_METHJ|PROTEASOME-ACTIVATING nucleotidase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 HDVGSEL 10
H VGSEL
Sbjct: 217 HTVGSEL 223




46|Sequence|226|235|VGSELPPEGV

>sp|SYR_HALWD|ARGININE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 VGSELPPEGV 10
+G E PPE V
Sbjct: 27 LGVETPPEDV 36


>sp|Y1401_SACS2|PUTATIVE CRISPR-associated protein SSO1401|Saccharolobus solfataricus

Query: 5 LPPEGV 10
LPPEG+
Sbjct: 7 LPPEGL 12


>sp|TRM1_METBU|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanococcoides burtonii

Query: 1 VGSELPPEGV 10
V +PPEGV
Sbjct: 13 VSVPVPPEGV 22


>sp|T1RH_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 2 GSELPPE 8
GSEL PE
Sbjct: 51 GSELTPE 57


>sp|RAD50_AERPE|DNA double-strand break repair Rad50|Aeropyrum pernix (strain ATCC

Query: 2 GSELPP 7
G+ELPP
Sbjct: 468 GAELPP 473


>sp|Y1421_ARCFU|UPF0182 protein AF_1421|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 ELPPEGV 10
++PPEG+
Sbjct: 442 DIPPEGL 448


>sp|ENDA_PYRNV|TRNA-SPLICING endonuclease|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 GSELPPE 8
G+E+PPE
Sbjct: 71 GAEIPPE 77


>sp|GGR_METPE|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 VGSELPPEG 9
+G+E+ PEG
Sbjct: 199 LGNEIAPEG 207


>sp|GGR_METMJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 VGSELPPEG 9
+G+E+ PEG
Sbjct: 199 LGNEIAPEG 207


>sp|TRUA_METAC|TRNA pseudouridine synthase A|Methanosarcina acetivorans (strain ATCC

Query: 1 VGSELPP 7
+ SELPP
Sbjct: 80 INSELPP 86


>sp|Y1223_PYRHO|UNCHARACTERIZED ZPR1-like protein PH1223|Pyrococcus horikoshii (strain ATCC

Query: 1 VGSELPPEGV 10
VG EL PE +
Sbjct: 16 VGEELKPEKI 25


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 2 GSELPPEG 9
G+E PP G
Sbjct: 533 GAECPPNG 540


>sp|GGR_METB6|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanoregula boonei (strain DSM 21154

Query: 1 VGSELPPEG 9
+G+E+ PEG
Sbjct: 199 LGNEVAPEG 207


>sp|BGAL_PYRWO|BETA-GALACTOSIDASE woesei

Query: 1 VGSELPPEGV 10
V +LP EG+
Sbjct: 48 VSGDLPEEGI 57


>sp|KHSE_METAR|HOMOSERINE kinase|Methanocella arvoryzae (strain DSM 22066

Query: 4 ELPPEGV 10
ELPP GV
Sbjct: 154 ELPPMGV 160




47|Sequence|231|240|PPEGVLGALL

>sp|MFNB_METVS|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|MFNB_METM7|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C7 /

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|MFNB_META3|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|Y1178_METJA|UNCHARACTERIZED glycosyltransferase MJ1178|Methanocaldococcus jannaschii (strain

Query: 2 PEGVLGALL 10
P+G +GALL
Sbjct: 94 PQGCVGALL 102


>sp|MFNB_METMP|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|MFNB_METM6|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C6 /

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|MFNB_METM5|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C5 /

Query: 1 PPEGVLGA 8
PPEG LGA
Sbjct: 29 PPEGSLGA 36


>sp|SECG_IGNH4|PREPROTEIN translocase subunit SecG|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 PPEGVLGA 8
PPE V+GA
Sbjct: 32 PPEAVIGA 39


>sp|FWDB_METJA|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanocaldococcus

Query: 1 PPEGVL 6
PPEGVL
Sbjct: 413 PPEGVL 418


>sp|TRUA_PYRFU|TRNA pseudouridine synthase A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PPEGVL 6
PPEG+L
Sbjct: 212 PPEGLL 217


>sp|CAS1D_METHJ|CRISPR-ASSOCIATED endonuclease Cas1 4|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PPEGVL 6
PPEG+L
Sbjct: 21 PPEGLL 26


>sp|Y1471_METMP|UNCHARACTERIZED protein MMP1471|Methanococcus maripaludis (strain DSM 14266

Query: 1 PPEGVLGA 8
PP G++G+
Sbjct: 112 PPMGIMGS 119


>sp|Y951_METJA|UNCHARACTERIZED protein MJ0951|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PPEGVLGA 8
PP G++G+
Sbjct: 119 PPMGIMGS 126


>sp|TRUA_PYRAB|TRNA pseudouridine synthase A|Pyrococcus abyssi (strain GE5 /

Query: 1 PPEGVL 6
PPEG+L
Sbjct: 212 PPEGLL 217


>sp|HEM1_METTH|GLUTAMYL-TRNA reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 PEGVLGAL 9
PEGV+ AL
Sbjct: 354 PEGVIEAL 361


>sp|CYAS_METBF|CYSTEATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PPEGVLGAL 9
PP GV+G L
Sbjct: 309 PPYGVMGGL 317


>sp|Y1581_ARCFU|UNCHARACTERIZED protein AF_1581|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PPEGVLGA 8
PP GV+G+
Sbjct: 64 PPGGVMGS 71


>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 1 PPEGVLG 7
P EGVLG
Sbjct: 1107 PAEGVLG 1113


>sp|ASPD_METMA|L-ASPARTATE dehydrogenase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PPEGVLGA 8
PP G++GA
Sbjct: 149 PPSGLMGA 156




48|Sequence|236|245|LGALLRVKRL

>sp|KPRS_SULTO|RIBOSE-PHOSPHATE pyrophosphokinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GALLRVKRL 10
GAL R KRL
Sbjct: 167 GALERAKRL 175


>sp|KPRS_SULAC|RIBOSE-PHOSPHATE pyrophosphokinase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GALLRVKRL 10
GAL R KRL
Sbjct: 167 GALNRAKRL 175




49|Sequence|241|250|RVKRLETPAP

>sp|AGO_METJA|PROTEIN argonaute|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RVKRLETPAP 10
R++ +ETPAP
Sbjct: 530 RIQPIETPAP 539


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 RVKRLETPAP 10
RV+ LE P+P
Sbjct: 273 RVRLLERPSP 282


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 VKRLETPAP 10
VKRL+ P P
Sbjct: 821 VKRLDLPNP 829


>sp|RL22_METVS|LARGE ribosomal subunit protein uL22|Methanococcus vannielii (strain

Query: 1 RVKRLETPAP 10
RV LETP P
Sbjct: 51 RVLALETPVP 60


>sp|RL22_METMP|LARGE ribosomal subunit protein uL22|Methanococcus maripaludis (strain

Query: 1 RVKRLETPAP 10
RV LETP P
Sbjct: 51 RVIALETPVP 60


>sp|RL22_METM7|LARGE ribosomal subunit protein uL22|Methanococcus maripaludis (strain

Query: 1 RVKRLETPAP 10
RV LETP P
Sbjct: 51 RVIALETPVP 60


>sp|RL22_METM6|LARGE ribosomal subunit protein uL22|Methanococcus maripaludis (strain

Query: 1 RVKRLETPAP 10
RV LETP P
Sbjct: 51 RVIALETPVP 60


>sp|RL22_METM5|LARGE ribosomal subunit protein uL22|Methanococcus maripaludis (strain

Query: 1 RVKRLETPAP 10
RV LETP P
Sbjct: 51 RVIALETPVP 60


>sp|AOR_THEKO|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase|Thermococcus kodakarensis

Query: 2 VKRLETPA 9
VK+LE PA
Sbjct: 419 VKKLELPA 426


>sp|AOR_PYRFU|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase|Pyrococcus furiosus (strain ATCC

Query: 2 VKRLETPA 9
VK+LE PA
Sbjct: 419 VKKLELPA 426


>sp|RS10_AERPE|SMALL ribosomal subunit protein uS10|Aeropyrum pernix (strain ATCC

Query: 2 VKRLETPA 9
VKRLE P
Sbjct: 43 VKRLEVPV 50




50|Sequence|246|260|ETPAPQVPARRLLPP

>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 2 TPAPQVPAR 10
TPAPQ+ R
Sbjct: 3510 TPAPQMQGR 3518


Query: 2 TPAPQVPAR 10
TPAPQ+ R
Sbjct: 4910 TPAPQMQGR 4918


>sp|RFCL_METMA|REPLICATION factor C large subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ETPAPQVPARR 11
E+P PQ P R+
Sbjct: 478 ESPGPQSPERK 488


>sp|MCRB_METVO|METHYL-COENZYME M reductase subunit beta|Methanococcus voltae

Query: 4 APQVPARRL 12
A QVP++RL
Sbjct: 113 AEQVPSKRL 121


>sp|KHSE_THEGJ|HOMOSERINE kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 PAPQVP---ARRLLPP 15
PA ++P ARR+LPP
Sbjct: 165 PAVEIPTSEARRVLPP 180


>sp|THIE_METMJ|THIAMINE-PHOSPHATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 PQVPARRLLPP 15
P ARR++PP
Sbjct: 89 PVGEARRIVPP 99


>sp|PCNA_NITMS|DNA polymerase sliding clamp|Nitrosopumilus maritimus (strain SCM1)

Query: 1 ETPAPQVP 8
+TP P++P
Sbjct: 120 DTPLPKIP 127


>sp|DNLI_METS5|DNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 2 TPAPQVPARRLL 13
+P P +P R +L
Sbjct: 227 SPTPGIPIRPML 238


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 2 TPAPQVPARR 11
TP P++P R
Sbjct: 46 TPMPKIPTLR 55


>sp|Y142_AERPE|UNCHARACTERIZED HTH-type transcriptional regulator APE_0142|Aeropyrum pernix

Query: 6 QVPARRLLPP 15
Q+P RL PP
Sbjct: 170 QIPNNRLQPP 179


>sp|THYX_PYRAB|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus abyssi (strain GE5 /

Query: 8 PARRLLPP 15
P R L+PP
Sbjct: 219 PERELMPP 226


>sp|CYAS_METAR|CYSTEATE synthase|Methanocella arvoryzae (strain DSM 22066

Query: 1 ETPAPQVPARRLL 13
E P P VP +L
Sbjct: 401 EVPGPDVPMEEIL 413


>sp|GLCD1_HALTV|GLUCOSE 1-dehydrogenase 1|Haloterrigena turkmenica (strain ATCC 51198

Query: 1 ETPAPQVP 8
ETP P+VP
Sbjct: 230 ETPVPEVP 237


>sp|PDAD_METMP|PYRUVOYL-DEPENDENT arginine decarboxylase|Methanococcus maripaludis (strain DSM

Query: 3 PAPQVPARRLLP 14
P P++P L+P
Sbjct: 62 PLPKIPQGSLVP 73


>sp|PDAD_METM5|PYRUVOYL-DEPENDENT arginine decarboxylase|Methanococcus maripaludis (strain C5 /

Query: 3 PAPQVPARRLLP 14
P P++P L+P
Sbjct: 62 PLPKIPQGSLVP 73


>sp|PDAD_METM6|PYRUVOYL-DEPENDENT arginine decarboxylase|Methanococcus maripaludis (strain C6 /

Query: 3 PAPQVPARRLLP 14
P P++P L+P
Sbjct: 62 PLPKIPQGSLVP 73


>sp|PDAD_METM7|PYRUVOYL-DEPENDENT arginine decarboxylase|Methanococcus maripaludis (strain C7 /

Query: 3 PAPQVPARRLLP 14
P P++P L+P
Sbjct: 62 PLPKIPQGSLVP 73




51|Sequence|251|260|QVPARRLLPP

>sp|THIE_METMJ|THIAMINE-PHOSPHATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 ARRLLPP 10
ARR++PP
Sbjct: 93 ARRIVPP 99


>sp|RL24_PICTO|LARGE ribosomal subunit protein uL24|Picrophilus torridus (strain ATCC

Query: 1 QVPARRLLPP 10
++ AR+ LPP
Sbjct: 97 EIAARKNLPP 106


>sp|PINA_SULAC|HOLLIDAY junction branch migration ATPase|Sulfolobus acidocaldarius

Query: 2 VPARRLLP 9
+PAR LLP
Sbjct: 1 MPARDLLP 8


>sp|THYX_PYRAB|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus abyssi (strain GE5 /

Query: 3 PARRLLPP 10
P R L+PP
Sbjct: 219 PERELMPP 226


>sp|THYX_PYRHO|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PARRLLPP 10
P R L+PP
Sbjct: 219 PERELMPP 226


>sp|KHSE_THEGJ|HOMOSERINE kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 ARRLLPP 10
ARR+LPP
Sbjct: 174 ARRVLPP 180


>sp|Y142_AERPE|UNCHARACTERIZED HTH-type transcriptional regulator APE_0142|Aeropyrum pernix

Query: 1 QVPARRLLPP 10
Q+P RL PP
Sbjct: 170 QIPNNRLQPP 179


>sp|SYFA_THEON|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus onnurineus (strain NA1)

Query: 1 QVPARRLLP 9
Q P RR+ P
Sbjct: 227 QAPVRRIYP 235






THE END